Browse Element(s) Details


Os.2359.1.S1_s_at

Description gb:AF225922.1
DB_XREF= gi:7109231
GEN=SC
TID=Os.2359.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2359 (NCBI UniGene Cluster)
DEF=Oryza sativa secretory carrier membrane protein (SC) mRNA, complete cds.
PROD=secretory carrier membrane protein
FL= gb:AF225922.1 gb:AK068498.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5722011/11SCAMP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57160Os.46314.3.S1_at4/111+33360451..33366304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57160OsAffx.7362.1.S1_x_at1/111+33360451..33366304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57160OsAffx.1365.1.S1_at1/111+33360451..33366304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57170OsAffx.23816.1.S1_at11/111+33367703..33368507hypothetical protein
LOC_Os01g57180OsAffx.22940.2.S1_s_at11/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.1.S1_s_at11/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.3.S1_x_at8/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.2.S1_at7/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.5.S1_x_at5/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.5.S1_at2/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.31552.2.S1_at1/111+33369542..33370705hypothetical protein
LOC_Os01g57190NANA1+33371028..33371651hypothetical protein
LOC_Os01g57210Os.16815.1.S1_at11/111+33377696..33385344Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os01g57210Os.5306.1.S1_at11/111+33377696..33385344Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os01g57220Os.2359.1.S1_s_at11/111+33386035..33391559SCAMP family protein, expressed
LOC_Os01g57220Os.9727.1.S1_at1/111+33386035..33391559SCAMP family protein, expressed
LOC_Os01g57230Os.50348.1.S1_at11/111+33391574..33394682transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g57240Os.30597.1.S1_at11/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.2.S1_at11/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.3.S1_x_at9/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.3.S1_at3/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57250Os.38457.1.S1_s_at11/111+33408969..33410242expressed protein
LOC_Os01g57250Os.48500.1.A1_s_at11/111+33408969..33410242expressed protein
LOC_Os01g57250OsAffx.3864.1.S1_x_at1/111+33408969..33410242expressed protein
LOC_Os01g57260Os.11144.1.S1_at11/111+33416058..33417156VPS28 protein homolog 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045045biological_processsecretory pathway
GO:0005739cellular_componentmitochondrion
GO:0005386molecular_functioncarrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2359.1.S1_s_at--445--1051Chr01:33389718..33389742 (25 bp)
AGGTGTTATGATCTGGTTGCTAGCC
LOC_Os01g57220
Os.2359.1.S1_s_at--430--6411Chr01:33389727..33389751 (25 bp)
GATCTGGTTGCTAGCCATTATCTAC
LOC_Os01g57220
Os.2359.1.S1_s_at--501--1691Chr01:33389772..33389796 (25 bp)
AGCCTATGTGTTATGGTATCGCCCC
LOC_Os01g57220
Os.2359.1.S1_s_at--1087--9911Chr01:33390082..33390106 (25 bp)
TACTGTTCTGCATCTGGTCTGCTGT
LOC_Os01g57220
Os.2359.1.S1_s_at--346--8571Chr01:33390812..33390836 (25 bp)
TGGATTTGGACTGTTCTGCCTTGAA
LOC_Os01g57220
Os.2359.1.S1_s_at--276--9191Chr01:33390828..33390852 (25 bp)
TGCCTTGAATCACTACTCAGCGTTG
LOC_Os01g57220
Os.2359.1.S1_s_at--1157--9651Chr01:33390844..33391138 (25 bp)
TCAGCGTTGTTGTCATCCAGCAAGT
LOC_Os01g57220
Os.2359.1.S1_s_at--371--9431Chr01:33391193..33391217 (25 bp)
TCGTGGTGCTATGAGATCGGCCTTT
LOC_Os01g57220
Os.2359.1.S1_s_at--1114--8411Chr01:33391211..33391235 (25 bp)
GGCCTTTTGATAGAGCTGCTTCGAT
LOC_Os01g57220
Os.2359.1.S1_s_at--566--8671Chr01:33391264..33391288 (25 bp)
TGTGGTGGCGCCTTGTACATCCCTA
LOC_Os01g57220
Os.2359.1.S1_s_at--26--7931Chr01:33391343..33391367 (25 bp)
GGATTTTCCTGCCTTAATGTAATAT
LOC_Os01g57220
Target Sequence 
AGGTGTTATGATCTGGTTGCTAGCCATTATCTACTTTATATCTGGTGTACCTGGAGCCTATGTGTTATGGTATCGCCCCC
TTTACAATGCGATGAGGACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGATCCNATATACTGTTCTG
CATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGCTGGGATTTTGCCGGCTATTGATGTCATAG
GAAACAATGCTATTGTGGGGATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCGTTGTTGTC
ATCCAGCAAGTATACATGTATTTCCGTGGAAGTGGGAAGGCTGCTGAGATGAAACGTGAGGCAGCTCGTGGTGCTATGAG
ATCGGCCTTTTGATAGAGCTGCTTCGATGGACGGGAGAGAATAGGATGTGTCGTTCTGTGGTGGCGCCTTGTACATCCCT
ACACCTATGTTGTTCGTATCTAAGTTATTCCATTTTACAGCAGCATATAGCTAAAGGATTTTCCTGCCTTAATGTAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2359.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis