Browse Element(s) Details


OsAffx.23816.1.S1_at

Description tigr:9629.m05600
TID=OsAffx.23816.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5717011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57120NANA1+33342773..33347066retrotransposon protein, putative, unclassified
LOC_Os01g57130NANA1+33348199..33351347retrotransposon protein, putative, unclassified
LOC_Os01g57140OsAffx.23815.1.S1_at11/111+33353777..33354175hypothetical protein
LOC_Os01g57150Os.18458.1.S1_at11/111+33355959..33357337expressed protein
LOC_Os01g57160Os.46314.3.S1_at4/111+33360451..33366304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57160OsAffx.7362.1.S1_x_at1/111+33360451..33366304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57160OsAffx.1365.1.S1_at1/111+33360451..33366304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57170OsAffx.23816.1.S1_at11/111+33367703..33368507hypothetical protein
LOC_Os01g57180OsAffx.22940.2.S1_s_at11/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.1.S1_s_at11/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.3.S1_x_at8/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.2.S1_at7/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.5.S1_x_at5/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.5.S1_at2/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.31552.2.S1_at1/111+33369542..33370705hypothetical protein
LOC_Os01g57190NANA1+33371028..33371651hypothetical protein
LOC_Os01g57210Os.16815.1.S1_at11/111+33377696..33385344Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os01g57210Os.5306.1.S1_at11/111+33377696..33385344Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os01g57220Os.2359.1.S1_s_at11/111+33386035..33391559SCAMP family protein, expressed
LOC_Os01g57220Os.9727.1.S1_at1/111+33386035..33391559SCAMP family protein, expressed
LOC_Os01g57230Os.50348.1.S1_at11/111+33391574..33394682transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23816.1.S1_at--364--6071Chr01:33368413..33368437 (25 bp)
GAGTTCTTGCGGAAGCTGCACGTCT
LOC_Os01g57170
OsAffx.23816.1.S1_at--696--9031Chr01:33368397..33368421 (25 bp)
TGCACGTCTGACTTATGTACATGAT
LOC_Os01g57170
OsAffx.23816.1.S1_at--892--3631Chr01:33368336..33368360 (25 bp)
CTTCCAGCTGTTGTAGCGCATGGTA
LOC_Os01g57170
OsAffx.23816.1.S1_at--1066--1631Chr01:33368322..33368346 (25 bp)
AGCGCATGGTATCACATCTATCCTG
LOC_Os01g57170
OsAffx.23816.1.S1_at--476--9091Chr01:33368278..33368302 (25 bp)
TGCTAATTTCGGCTCTTCAGACTAA
LOC_Os01g57170
OsAffx.23816.1.S1_at--482--5711Chr01:33368259..33368283 (25 bp)
GACTAATGAGTATGCCTCTGCTCCT
LOC_Os01g57170
OsAffx.23816.1.S1_at--221--6611Chr01:33368048..33368072 (25 bp)
GATTGTGATACCACTGATCCAGCTT
LOC_Os01g57170
OsAffx.23816.1.S1_at--709--2791Chr01:33367992..33368016 (25 bp)
AAGATGATCGATCGACCTTTACCCC
LOC_Os01g57170
OsAffx.23816.1.S1_at--55--7691Chr01:33367900..33367924 (25 bp)
GGGTTCATCCAACCAGCACGTGAGA
LOC_Os01g57170
OsAffx.23816.1.S1_at--405--5991Chr01:33367879..33367903 (25 bp)
GAGACGCCGGTGTTTGCTGGAACTT
LOC_Os01g57170
OsAffx.23816.1.S1_at--1130--91Chr01:33367773..33367797 (25 bp)
ATTCGCTCGGTAGTCACTCACAAGA
LOC_Os01g57170
Target Sequence 
GAGTTCTTGCGGAAGCTGCACGTCTGACTTATGTACATGATGCTATTTCAGTTGAAGCGGAGGCTTGCCTGGCAGCCCTT
CCAGCTGTTGTAGCGCATGGTATCACATCTATCCTGGTGGAATCTGATTTATCTGTGCTAATTTCGGCTCTTCAGACTAA
TGAGTATGCCTCTGCTCCTGGTGGGTCCATCTTCAGGGAGATCAAAGTCCTTGTTCAGTGGATTGTGATACCACTGATCC
AGCTTGGTAATAAAATGTCAGTGTTGAAGATCAAAAAAGATGATCGATCGACCTTTACCCCTCCTCCTGTTCCAACTTCC
AACCCATCCTCGCATGAGACAGTGCAGGCCGACGCGAGGAGATTCGCCGGGTTCATCCAACCAGCACGTGAGACGCCGGT
GTTTGCTGGAACTTTCCGTCGCCGTGAAGCACACGCGTGTCGATTCGCGTCGATCCGCCCGCTGCCGAAGCGACGTCCGG
TCGCTGCGGCGCGCGATTCGCTCGGTAGTCACTCACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis