Browse Element(s) Details


Os.50348.1.S1_at

Description gb:AK120823.1
DB_XREF= gi:37990446
TID=Os.50348.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50348 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019D06, full insert sequence.
FL= gb:AK120823.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5723011/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57170OsAffx.23816.1.S1_at11/111+33367703..33368507hypothetical protein
LOC_Os01g57180OsAffx.22940.2.S1_s_at11/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.1.S1_s_at11/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.3.S1_x_at8/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.2.S1_at7/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.5.S1_x_at5/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.5.S1_at2/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.31552.2.S1_at1/111+33369542..33370705hypothetical protein
LOC_Os01g57190NANA1+33371028..33371651hypothetical protein
LOC_Os01g57210Os.16815.1.S1_at11/111+33377696..33385344Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os01g57210Os.5306.1.S1_at11/111+33377696..33385344Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os01g57220Os.2359.1.S1_s_at11/111+33386035..33391559SCAMP family protein, expressed
LOC_Os01g57220Os.9727.1.S1_at1/111+33386035..33391559SCAMP family protein, expressed
LOC_Os01g57230Os.50348.1.S1_at11/111+33391574..33394682transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g57240Os.30597.1.S1_at11/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.2.S1_at11/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.3.S1_x_at9/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.3.S1_at3/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57250Os.38457.1.S1_s_at11/111+33408969..33410242expressed protein
LOC_Os01g57250Os.48500.1.A1_s_at11/111+33408969..33410242expressed protein
LOC_Os01g57250OsAffx.3864.1.S1_x_at1/111+33408969..33410242expressed protein
LOC_Os01g57260Os.11144.1.S1_at11/111+33416058..33417156VPS28 protein homolog 2, putative, expressed
LOC_Os01g57270Os.15222.1.S1_at10/111+33418551..33423079rust resistance protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50348.1.S1_at--549--531Chr01:33392098..33392122 (25 bp)
ATCGCAGGCTGGTTCTTCGTGTCCG
LOC_Os01g57230
Os.50348.1.S1_at--376--2671Chr01:33391849..33391873 (25 bp)
AAGCCGAGGAGATCGTGGAGCCTCC
LOC_Os01g57230
Os.50348.1.S1_at--1010--8531Chr01:33391834..33391858 (25 bp)
TGGAGCCTCCTCACCAGGAAGTGCA
LOC_Os01g57230
Os.50348.1.S1_at--5--1651Chr01:33391822..33391846 (25 bp)
ACCAGGAAGTGCAGGTTCGGGACCA
LOC_Os01g57230
Os.50348.1.S1_at--300--5071Chr01:33391784..33391808 (25 bp)
GCAGCCCACCATGAGCAGCAAATGA
LOC_Os01g57230
Os.50348.1.S1_at--636--3631Chr01:33391737..33391761 (25 bp)
CTTCCTGCCTAACCCAAGTATGAAA
LOC_Os01g57230
Os.50348.1.S1_at--620--7011Chr01:33391703..33391727 (25 bp)
GTACTAATCCCTTCAATTTTGATCC
LOC_Os01g57230
Os.50348.1.S1_at--59--10791Chr01:33391685..33391709 (25 bp)
TTGATCCTATAGTCTCTGAGCTTTG
LOC_Os01g57230
Os.50348.1.S1_at--1036--5911Chr01:33391668..33391692 (25 bp)
GAGCTTTGCTGTACCGAGCTAGTTA
LOC_Os01g57230
Os.50348.1.S1_at--15--10331Chr01:33391597..33391621 (25 bp)
TTTAGGCCTTGAACAGAGTCCTTCA
LOC_Os01g57230
Os.50348.1.S1_at--215--6111Chr01:33391582..33391606 (25 bp)
GAGTCCTTCAATATGTACTGTCATT
LOC_Os01g57230
Target Sequence 
ATCGCAGGCTGGTTCTTCGTGTCCGGCATCGCGGCGGCGGGCGGCGACGGCGCTCCGCAGCCGCACCCGGGGGGCAGCGC
CATCGTGCCTAAGGGCGCGGCGGCGGCCGGGCAGTCCGACGCCGACGCGGAGGCCGACGAGGGGAAGGGGAAGGAGCTCC
CCGCCGAGGCCATCACCGACGTGAAGGCGAGGGTGTCGGAGCTGGAGAAGGAGTGCATGAGCATGAAGCAGGAGATCCGG
CGGCTGGGGAAGCCGAGGAGATCGTGGAGCCTCCTCACCAGGAAGTGCAGGTTCGGGACCAAGGTGCAGCAAGCGCAGCC
CACCATGAGCAGCAAATGAGAGGCGCCTCACGCCCTGCCTGCTTCCTGCCTAACCCAAGTATGAAATCAGTACAAGTACT
AATCCCTTCAATTTTGATCCTATAGTCTCTGAGCTTTGCTGTACCGAGCTAGTTAATGAAATGCAATAAGATGCTTATGT
TTCATAGGATAATAAGCTAGTTTTAGGCCTTGAACAGAGTCCTTCAATATGTACTGTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis