Browse Element(s) Details


OsAffx.1365.1.S1_at

Description gb:NM_187729.1
DB_XREF= gi:34902543
GEN=P0498A12.17
TID=OsAffx.1365.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0498A12.17 (P0498A12.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g571601/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57110Os.17162.2.S1_x_at11/111+33326901..33337069SNF2 domain-containing protein, putative, expressed
LOC_Os01g57120NANA1+33342773..33347066retrotransposon protein, putative, unclassified
LOC_Os01g57130NANA1+33348199..33351347retrotransposon protein, putative, unclassified
LOC_Os01g57140OsAffx.23815.1.S1_at11/111+33353777..33354175hypothetical protein
LOC_Os01g57150Os.18458.1.S1_at11/111+33355959..33357337expressed protein
LOC_Os01g57160Os.46314.3.S1_at4/111+33360451..33366304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57160OsAffx.7362.1.S1_x_at1/111+33360451..33366304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57160OsAffx.1365.1.S1_at1/111+33360451..33366304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57170OsAffx.23816.1.S1_at11/111+33367703..33368507hypothetical protein
LOC_Os01g57180OsAffx.22940.2.S1_s_at11/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.1.S1_s_at11/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.3.S1_x_at8/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.2.S1_at7/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.5.S1_x_at5/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.5.S1_at2/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.31552.2.S1_at1/111+33369542..33370705hypothetical protein
LOC_Os01g57190NANA1+33371028..33371651hypothetical protein
LOC_Os01g57210Os.16815.1.S1_at11/111+33377696..33385344Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os01g57210Os.5306.1.S1_at11/111+33377696..33385344Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os01g57220Os.2359.1.S1_s_at11/111+33386035..33391559SCAMP family protein, expressed
LOC_Os01g57220Os.9727.1.S1_at1/111+33386035..33391559SCAMP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1365.1.S1_at--445--10191Chr01:10224726..10224750 (25 bp)
TATTTATGTGGTCTTCGTCGAGGCA
NONE
OsAffx.1365.1.S1_at--705--5051Chr01:10224705..10224728 (24 bp)
GCAGCAACTTCTCGTGACCAACGAA
NONE
OsAffx.1365.1.S1_at--349--5311Chr01:10224531..10224555 (25 bp)
GAAGGACATTTATTCACCGACTGTG
NONE
OsAffx.1365.1.S1_at--345--5731Chr01:10224513..10224537 (25 bp)
GACTGTGGTCACTATGGCTCAAGGA
NONE
OsAffx.1365.1.S1_at--119--1931Chr01:10224487..10224511 (25 bp)
ACGGTGGAGCTTTTGTGTCGTCTCT
NONE
OsAffx.1365.1.S1_at--267--7211Chr01:10224471..10224495 (25 bp)
GTCGTCTCTGTGTTATCACCATCGA
NONE
OsAffx.1365.1.S1_at--361--6451Chr01:10221466..10221490 (25 bp)
GATCAATCTTCCCAGGCAATGACAT
NONE
OsAffx.1365.1.S1_at--500--4091Chr01:10221120..10221144 (25 bp)
CGAACTAGTTTTGACGACGAAGCCA
NONE
OsAffx.1365.1.S1_at--641--9831Chr01:10221092..10221116 (25 bp)
TAAACATACAACGTGACCTCTGCCA
NONE
OsAffx.1365.1.S1_at--90--2052Chr01:33365880..33366213 (25 bp)
ACTTTATCCACCACGAGTGTTGTCA
LOC_Os01g57160
OsAffx.1365.1.S1_at--402--5673Chr11:11524612..11524744 (25 bp)
GACTTTTCTTCGACCCCGAAGGCAG
NONE
Target Sequence 
TATTTATGTGGTCTTCGTCGAGGCAGCAACTTCTCGTGACCAACGAATCCATGAGAATGAGGAAAACATCAATCTTAGCT
TGAGGACGAGAAGGACATTTATTCACCGACTGTGGTCACTATGGCTCAAGGAGACGGTGGAGCTTTTGTGTCGTCTCTGT
GTTATCACCATCGAGGGGAGAAGGATAGAAGGGATGGAGGAGGAAGATCAAGTGGGGACGGGGGTCGAGGTGGCCATCCG
CCTGCGAAGATCAATCTTCCCAGGCAATGACATAAGAATCGAACATCGAACTAGTTTTGACGACGAAGCCATTATAAACA
TACAACGTGACCTCTGCCACTTTATCCACCACGAGTGTTGTCATAAAGATGGACTTTTCTTCGACCCCGAAGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis