Browse Element(s) Details


Os.17162.2.S1_x_at

Description gb:AK072085.1
DB_XREF= gi:32982108
TID=Os.17162.2
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17162 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116F16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119B08, full insert sequence.
FL= gb:AK072085.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5711011/11SNF2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57082OsAffx.11631.1.S1_x_at11/111+33292159..33314380Insulinase containing protein, expressed
LOC_Os01g57082Os.26729.1.A1_at11/111+33292159..33314380Insulinase containing protein, expressed
LOC_Os01g57082OsAffx.11631.1.S1_at11/111+33292159..33314380Insulinase containing protein, expressed
LOC_Os01g57100Os.49178.1.S1_at11/111+33323610..33326025Protein kinase domain containing protein, expressed
LOC_Os01g57110Os.17162.2.S1_x_at11/111+33326901..33337069SNF2 domain-containing protein, putative, expressed
LOC_Os01g57120NANA1+33342773..33347066retrotransposon protein, putative, unclassified
LOC_Os01g57130NANA1+33348199..33351347retrotransposon protein, putative, unclassified
LOC_Os01g57140OsAffx.23815.1.S1_at11/111+33353777..33354175hypothetical protein
LOC_Os01g57150Os.18458.1.S1_at11/111+33355959..33357337expressed protein
LOC_Os01g57160Os.46314.3.S1_at4/111+33360451..33366304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57160OsAffx.7362.1.S1_x_at1/111+33360451..33366304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57160OsAffx.1365.1.S1_at1/111+33360451..33366304transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17162.2.S1_x_at--909--2571Chr01:33327415..33327439 (25 bp)
AACGGGAGATGGTGGCTTCTGCATT
LOC_Os01g57110
Os.17162.2.S1_x_at--701--8191Chr01:33327387..33327411 (25 bp)
GGAAGACAAATCTGGTGCCCATCAA
LOC_Os01g57110
Os.17162.2.S1_x_at--1135--811Chr01:33327326..33327350 (25 bp)
ATGGTTTAGCATTTCTCCTGAGATT
LOC_Os01g57110
Os.17162.2.S1_x_at--841--3131Chr01:33327295..33327319 (25 bp)
AATTTTGCTCGTGGGATGGTGTAAC
LOC_Os01g57110
Os.17162.2.S1_x_at--678--6831Chr01:33327215..33327239 (25 bp)
GTTTCTAGTTTGTACAGGTGCTCAG
LOC_Os01g57110
Os.17162.2.S1_x_at--550--10371Chr01:33327154..33327178 (25 bp)
TTTTTTCTCCGTGCAAGTGGCAACT
LOC_Os01g57110
Os.17162.2.S1_x_at--940--5891Chr01:33327110..33327134 (25 bp)
GAGCTGCAGTGGTGTCTTTTGATCA
LOC_Os01g57110
Os.17162.2.S1_x_at--212--8071Chr01:33327073..33327097 (25 bp)
GGAGAACGTCATTAGCTAACGCCAT
LOC_Os01g57110
Os.17162.2.S1_x_at--19--7031Chr01:33327044..33327068 (25 bp)
GTACATAGTTTTCACCAGCAATCTT
LOC_Os01g57110
Os.17162.2.S1_x_at--659--2011Chr01:33327018..33327042 (25 bp)
ACTCATCTTGAGCTTCGCATTTCAG
LOC_Os01g57110
Os.17162.2.S1_x_at--410--4131Chr01:33327003..33327027 (25 bp)
CGCATTTCAGCCGTATGGTTGTACA
LOC_Os01g57110
Target Sequence 
AACGGGAGATGGTGGCTTCTGCATTTGGGGAAGACAAATCTGGTGCCCATCAAACTAGATTGACGGTGGAAGACTTGAAC
TATTTGTTTATGGTTTAGCATTTCTCCTGAGATTGGACACAATTTTGCTCGTGGGATGGTGTAACTTGCATCTATAGGTG
AAATATCTGTCAGGAGATAGCATTTCTCTAGGCNTCTAGTGTTTCTAGTTTGTACAGGTGCTCAGATTTTGTAGTTAAAG
GTGGCATTGTGGTGCGATTCATTTTTTTCTCCGTGCAAGTGGCAACTCATCAGGTAATTTTTCGATGAGCTGCAGTGGTG
TCTTTTGATCATGAAGATACAAAGGAGAACGTCATTAGCTAACGCCATATTTGTACATAGTTTTCACCAGCAATCTTAAC
TCATCTTGAGCTTCGCATTTCAGCCGTATGGTTGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17162.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis