Browse Element(s) Details


Os.49178.1.S1_at

Description gb:AK121676.1
DB_XREF= gi:37991299
TID=Os.49178.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49178 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068N04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068N04, full insert sequence.
FL= gb:AK121676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5710011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57082OsAffx.11631.1.S1_x_at11/111+33292159..33314380Insulinase containing protein, expressed
LOC_Os01g57082Os.26729.1.A1_at11/111+33292159..33314380Insulinase containing protein, expressed
LOC_Os01g57082OsAffx.11631.1.S1_at11/111+33292159..33314380Insulinase containing protein, expressed
LOC_Os01g57100Os.49178.1.S1_at11/111+33323610..33326025Protein kinase domain containing protein, expressed
LOC_Os01g57110Os.17162.2.S1_x_at11/111+33326901..33337069SNF2 domain-containing protein, putative, expressed
LOC_Os01g57120NANA1+33342773..33347066retrotransposon protein, putative, unclassified
LOC_Os01g57130NANA1+33348199..33351347retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49178.1.S1_at--263--9931Chr01:33325439..33325463 (25 bp)
TACGGCAAGAGAGCCATCCTCGAAG
LOC_Os01g57100
Os.49178.1.S1_at--819--3951Chr01:33325467..33325491 (25 bp)
CGGACCAGAGGCTCAATGGCAAGTT
LOC_Os01g57100
Os.49178.1.S1_at--1153--8291Chr01:33325476..33325500 (25 bp)
GGCTCAATGGCAAGTTCGACCTCGA
LOC_Os01g57100
Os.49178.1.S1_at--336--2971Chr01:33325481..33325505 (25 bp)
AATGGCAAGTTCGACCTCGAGCAGA
LOC_Os01g57100
Os.49178.1.S1_at--742--5831Chr01:33325493..33325517 (25 bp)
GACCTCGAGCAGATGGAGCGGCTCA
LOC_Os01g57100
Os.49178.1.S1_at--119--7511Chr01:33325520..33325544 (25 bp)
GTGGTAGGATTGTGGTGCGCGCACC
LOC_Os01g57100
Os.49178.1.S1_at--636--1771Chr01:33325557..33325581 (25 bp)
ACCGGCCGAGCATCAGGCAGGCGCT
LOC_Os01g57100
Os.49178.1.S1_at--540--931Chr01:33325571..33325595 (25 bp)
AGGCAGGCGCTGAACGTGCTCAAGT
LOC_Os01g57100
Os.49178.1.S1_at--1162--4111Chr01:33325578..33325602 (25 bp)
CGCTGAACGTGCTCAAGTTCGAGGC
LOC_Os01g57100
Os.49178.1.S1_at--746--4151Chr01:33325620..33325644 (25 bp)
CGCCCAAGATGCCGGTGCCGTCGTA
LOC_Os01g57100
Os.49178.1.S1_at--773--891Chr01:33325708..33325732 (25 bp)
AGGCGTCAGTGAGTGTGGATCGTCT
LOC_Os01g57100
Target Sequence 
TACGGCAAGAGAGCCATCCTCGAAGCCGCGGACCAGAGGCTCAATGGCAAGTTCGACCTCGAGCAGATGGAGCGGCTCAT
GGTGGTAGGATTGTGGTGCGCGCACCCCGACCACGCGCACCGGCCGAGCATCAGGCAGGCGCTGAACGTGCTCAAGTTCG
AGGCGCCGCTGCCGTCGCTGCCGCCCAAGATGCCGGTGCCGTCGTACNTCCCGCCGCCGGACTTGGTCGCTCCGGTGTNC
GTCGAAGGCACGTCGAGCACCGATGGNCCAGGCGTCAGTGAGTGTGGATCGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49178.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis