Browse Element(s) Details


Os.26729.1.A1_at

Description gb:AK100383.1
DB_XREF= gi:32985592
TID=Os.26729.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26729 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023085G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023085G23, full insert sequence.
FL= gb:AK100383.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5708211/11Insulinase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57020OsAffx.11630.1.S1_at11/111+33266805..33270743expressed protein
LOC_Os01g57020OsAffx.16153.1.S1_at1/111+33266805..33270743expressed protein
LOC_Os01g57030NANA1+33271966..33272172expressed protein
LOC_Os01g57040NANA1+33273310..33273781expressed protein
LOC_Os01g57050OsAffx.2348.1.S1_at11/111+33275255..33275589hypothetical protein
LOC_Os01g57066Os.14351.1.A1_at11/111+33283762..33290138expressed protein
LOC_Os01g57082OsAffx.11631.1.S1_x_at11/111+33292159..33314380Insulinase containing protein, expressed
LOC_Os01g57082Os.26729.1.A1_at11/111+33292159..33314380Insulinase containing protein, expressed
LOC_Os01g57082OsAffx.11631.1.S1_at11/111+33292159..33314380Insulinase containing protein, expressed
LOC_Os01g57100Os.49178.1.S1_at11/111+33323610..33326025Protein kinase domain containing protein, expressed
LOC_Os01g57110Os.17162.2.S1_x_at11/111+33326901..33337069SNF2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26729.1.A1_at--675--7211Chr01:33303020..33303208 (25 bp)
GTCGAGTCTGAGGTAGCTCTTCTAA
LOC_Os01g57082
Os.26729.1.A1_at--582--8531Chr01:33303443..33303467 (25 bp)
TGGACTGACAGCTAGAATTAGTTAC
LOC_Os01g57082
Os.26729.1.A1_at--1140--1471Chr01:33303456..33303480 (25 bp)
AGAATTAGTTACACTCTCTTATAGT
LOC_Os01g57082
Os.26729.1.A1_at--414--10571Chr01:33303485..33303509 (25 bp)
TTCTTTCTCGCGGTGATATATAGCT
LOC_Os01g57082
Os.26729.1.A1_at--1136--291Chr01:33303504..33303528 (25 bp)
ATAGCTTGTGTATATGCATGAACTG
LOC_Os01g57082
Os.26729.1.A1_at--713--2951Chr01:33303546..33303570 (25 bp)
AATGGCCGGAGTATACACGATTGCT
LOC_Os01g57082
Os.26729.1.A1_at--1125--6071Chr01:33303554..33303578 (25 bp)
GAGTATACACGATTGCTATTCTTAT
LOC_Os01g57082
Os.26729.1.A1_at--1002--10711Chr01:33303566..33303590 (25 bp)
TTGCTATTCTTATGGTATGATTCAC
LOC_Os01g57082
Os.26729.1.A1_at--933--10111Chr01:33303581..33303605 (25 bp)
TATGATTCACCAATGCACGTACTTC
LOC_Os01g57082
Os.26729.1.A1_at--357--1691Chr01:33303589..33303613 (25 bp)
ACCAATGCACGTACTTCCGAATGAA
LOC_Os01g57082
Os.26729.1.A1_at--372--2211Chr01:33303619..33303643 (25 bp)
ACAACTGTACAGACTACTAGAGAGT
LOC_Os01g57082
Target Sequence 
GTCGAGTCTGAGGTAGCTCTTCTAAGAGAGCTGAAGAAAGAAGAATTCATCGAATTTTTTGATCAGCATATAAGANTTGG
TGCCCCTCAAAGGAAAACTGTAAGCGTGCAAGTCTTCGGCGGCGAACATTTGGCAGAGTTCAAGAAGGCCATTGCTGAAG
CTGATACACCCAAAACTTACCGAATCACTGACATATTCGGCTTCAAGCGATCCAGACCTTTGTACCGCTCACTGAAGGGA
GGGCCAGGCCGGATCACAATGGACTGACAGCTAGAATTAGTTACACTCTCTTATAGTNTTATTCTTTCTCGCGGTGATAT
ATAGCTTGTGTATATGCATGAACTGAATTTTGACNGGCATTTTAATGGCCGGAGTATACACGATTGCTATTCTTATGGTA
TGATTCACCAATGCACGTACTTCCGAATGAAATNTAACAACTGTACAGACTACTAGAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26729.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis