Browse Element(s) Details


OsAffx.11630.1.S1_at

Description tigr:9629.m05585
TID=OsAffx.11630.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5702011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56980OsAffx.23812.1.S1_x_at11/111+33237110..33252182LOC495012 protein, putative, expressed
LOC_Os01g56990Os.16916.1.S1_at9/111+33256049..33259634Regulator of chromosome condensation family protein
LOC_Os01g57004Os.55339.1.S1_at1/111+33261136..33261370NA
LOC_Os01g57020OsAffx.11630.1.S1_at11/111+33266805..33270743expressed protein
LOC_Os01g57020OsAffx.16153.1.S1_at1/111+33266805..33270743expressed protein
LOC_Os01g57030NANA1+33271966..33272172expressed protein
LOC_Os01g57040NANA1+33273310..33273781expressed protein
LOC_Os01g57050OsAffx.2348.1.S1_at11/111+33275255..33275589hypothetical protein
LOC_Os01g57066Os.14351.1.A1_at11/111+33283762..33290138expressed protein
LOC_Os01g57082OsAffx.11631.1.S1_x_at11/111+33292159..33314380Insulinase containing protein, expressed
LOC_Os01g57082Os.26729.1.A1_at11/111+33292159..33314380Insulinase containing protein, expressed
LOC_Os01g57082OsAffx.11631.1.S1_at11/111+33292159..33314380Insulinase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11630.1.S1_at--255--4711Chr01:33268218..33268297 (25 bp)
GCGGCCTCCGGATTATCTGGCGTGA
LOC_Os01g57020
OsAffx.11630.1.S1_at--69--9291Chr01:33268282..33268303 (22 bp)
TCCGGATTATCTGGCGTGACAGGGT
LOC_Os01g57020
OsAffx.11630.1.S1_at--300--5111Chr01:33268877..33268901 (25 bp)
GCACTCGCACATGCAGTCGTGCAGG
LOC_Os01g57020
OsAffx.11630.1.S1_at--176--3311Chr01:33268884..33268908 (25 bp)
CACATGCAGTCGTGCAGGGTCTTCA
LOC_Os01g57020
OsAffx.11630.1.S1_at--1130--1511Chr01:33268923..33268942 (20 bp)
AGCAGCACCAGCTCCCGGGTGGGCA
LOC_Os01g57020
OsAffx.11630.1.S1_at--774--3412Chr01:33270369..33270393 (25 bp)
CAGCAAGAGCTGGTGGCGAGGCCAT
LOC_Os01g57020
OsAffx.11630.1.S1_at--695--8491Chr01:33270393..33270417 (25 bp)
TGGCTATGGCTGTCGCAACGGCGCC
LOC_Os01g57020
OsAffx.11630.1.S1_at--171--5951Chr01:33270435..33270459 (25 bp)
GAGCACCACGGATGGCAGCGCTCGT
LOC_Os01g57020
OsAffx.11630.1.S1_at--345--3931Chr01:33270502..33270526 (25 bp)
CGGCGCTCCTTGTGGTCACGGCAGA
LOC_Os01g57020
OsAffx.11630.1.S1_at--690--3811Chr01:33270507..33270531 (25 bp)
CTCCTTGTGGTCACGGCAGAGGCTG
LOC_Os01g57020
OsAffx.11630.1.S1_at--405--7191Chr01:33270637..33270661 (25 bp)
GTCGGGACTCGGGACCATGGCGGTC
LOC_Os01g57020
Target Sequence 
GCGGCCTCCGGATTATCTGGCGTGACAGGGTGGGCAAGAAGGTGAAGGCAGTGCGGGAAGGAGTTCAAGCCGCAGGAGCT
GCACTCGCACATGCAGTCGTGCAGGGTCTTCAGGGAGAAGATGAGGAGCAGCACCAGCTCCCGGGTGGGCAGCAAGAGCT
GGTGGCGAGGCCATGGCTATGGCTGTCGCAACGGCGCCACGCCACTGCTAGCCAGGAGCACCACGGATGGCAGCGCTCGT
CGTGGCCGCGGCGGAGGCTAGAGGCAGCGCCGACGTGGACGGCGGCGCTCCTTGTGGTCACGGCAGAGGCTGGAGGCGGC
AGTCCTTGTGGCCGCGGCGGAGGTTGGAGGCGGACGGCGATGCTCGTCGGGGACGCGGCAGAGGCGGGAGGCAGCGCCGA
GGCAGACGGCGACGCTCGTCGGGACTCGGGACCATGGCGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11630.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis