Browse Element(s) Details


Os.16916.1.S1_at

Description gb:NM_191481.1
DB_XREF= gi:34910045
GEN=P0413G02.24
TID=Os.16916.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.16916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0413G02.24 (P0413G02.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0413G02.24 (P0413G02.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g569909/11Regulator of chromosome condensation family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56960OsAffx.23812.1.S1_x_at11/111+33230123..33232511expressed protein
LOC_Os01g56969Os.5389.1.S1_at11/111+33234091..33235585hypothetical protein
LOC_Os01g56969Os.5389.1.S1_s_at4/111+33234091..33235585hypothetical protein
LOC_Os01g56980OsAffx.23812.1.S1_x_at11/111+33237110..33252182LOC495012 protein, putative, expressed
LOC_Os01g56990Os.16916.1.S1_at9/111+33256049..33259634Regulator of chromosome condensation family protein
LOC_Os01g57004Os.55339.1.S1_at1/111+33261136..33261370NA
LOC_Os01g57020OsAffx.11630.1.S1_at11/111+33266805..33270743expressed protein
LOC_Os01g57020OsAffx.16153.1.S1_at1/111+33266805..33270743expressed protein
LOC_Os01g57030NANA1+33271966..33272172expressed protein
LOC_Os01g57040NANA1+33273310..33273781expressed protein
LOC_Os01g57050OsAffx.2348.1.S1_at11/111+33275255..33275589hypothetical protein
LOC_Os01g57066Os.14351.1.A1_at11/111+33283762..33290138expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0003682molecular_functionchromatin binding
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
GO:0008270molecular_functionzinc ion binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16916.1.S1_at--437--8871Chr01:33257022..33257046 (25 bp)
TGATGATGATCAACCTCGGCCAGTC
LOC_Os01g56990
Os.16916.1.S1_at--118--10791Chr01:33256847..33256871 (25 bp)
TTGTACACAATTGGCGCTTACCGTC
LOC_Os01g56990
Os.16916.1.S1_at--1052--7111Chr01:33256825..33256849 (25 bp)
GTCATCGTAAGCTTGATCCCCATGT
LOC_Os01g56990
Os.16916.1.S1_at--443--551Chr01:33256810..33256834 (25 bp)
ATCCCCATGTGTTGCCAAGTGCAGA
LOC_Os01g56990
Os.16916.1.S1_at--905--7331Chr01:33256781..33256805 (25 bp)
GTGCAGAGACTAAATCCCGCCACAA
LOC_Os01g56990
Os.16916.1.S1_at--1034--1951Chr01:33256370..33256394 (25 bp)
ACTGGTGAAGGTTCCCTGTGTTGAT
LOC_Os01g56990
Os.16916.1.S1_at--603--3471Chr01:33256339..33256363 (25 bp)
CAGGTGGTGCACATAGCTGCTGGCA
LOC_Os01g56990
Os.16916.1.S1_at--160--8251Chr01:33256318..33256342 (25 bp)
GGCACTGAACATTCTGCTTCGGTAA
LOC_Os01g56990
Os.16916.1.S1_at--569--4431Chr01:33256106..33256130 (25 bp)
GCCATGTTCTTCTGCTTCAGTTAAC
LOC_Os01g56990
Os.16916.1.S1_at--181--10471NONE
TTACCATTGCGTTGGATGTTCCTGC
NONE
Os.16916.1.S1_at--910--9931Chr01:33255225..33255249 (25 bp)
TACGTGCTACGATCTCGACGTCGAC
NONE
Target Sequence 
TGATGATGATCAACCTCGGCCAGTCTTTCCTTCTTTGGGTATTTCTCAAGTGGCATTAGGATGGCATCATGCATTAGTTT
TATCTGGTGAATTGTACACAATTGGCGCTTACCGTCATCGTAAGCTTGATCCCCATGTGTTGCCAAGTGCAGAGCCAGTG
CAGAGACTAAATCCCGCCACAACAAGCCATAGTCATGATGAATCATCCTCATCATCAACACTGGTGAAGGTTCCCTGTGT
TGATGGAGAACAGGTGGTGCACATAGCTGCTGGCACTGAACATTCTGCTTCGGTAACAGATAAAGGAACAGTCTTCACCT
GGGGTTGGGGAGAGCATGGACAGCTTGGTTTGGGAGATACTTGTGATCAAGTGACTCCACAGAGAGTTAATATAGGTGAT
AAGAGGCCATGTTCTTCTGCTTCAGTTAACGTCTATTGTGGGAGTGGATTTACCATTGCGTTGGATGTTCCTGCTACGTG
CTACGATCTCGACGTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis