Browse Element(s) Details


Os.5389.1.S1_s_at

Description gb:AK066370.1
DB_XREF= gi:32976388
TID=Os.5389.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5389 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013063J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013063J21, full insert sequence.
FL= gb:AK066370.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5694911/11expressed protein
LOC_Os01g569694/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56910Os.46009.1.S1_at11/111+33196141..33205044expressed protein
LOC_Os01g56930Os.19849.1.S1_at10/111+33213733..33219492aspartyl protease family protein, putative, expressed
LOC_Os01g56940Os.47361.1.S1_at10/111+33220231..33226565XPG I-region family protein, expressed
LOC_Os01g56949Os.5389.1.S1_s_at11/111+33227739..33229476expressed protein
LOC_Os01g56949Os.5389.1.S1_at11/111+33227739..33229476expressed protein
LOC_Os01g56960OsAffx.23812.1.S1_x_at11/111+33230123..33232511expressed protein
LOC_Os01g56969Os.5389.1.S1_at11/111+33234091..33235585hypothetical protein
LOC_Os01g56969Os.5389.1.S1_s_at4/111+33234091..33235585hypothetical protein
LOC_Os01g56980OsAffx.23812.1.S1_x_at11/111+33237110..33252182LOC495012 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5389.1.S1_s_at--990--10352Chr01:33235395..33235419 (25 bp)
TTTTAGTTGTACAGGCAAGCGAGGC
LOC_Os01g56969
Os.5389.1.S1_s_at--201--5172Chr01:33235493..33235517 (25 bp)
GCAAGCGAATCTTCAGCGTTCTCGA
LOC_Os01g56969
Os.5389.1.S1_s_at--1090--1632Chr01:33235507..33235531 (25 bp)
AGCGTTCTCGAGCACGAAAGCGGCT
LOC_Os01g56969
Os.5389.1.S1_s_at--33--1692Chr01:33235523..33235547 (25 bp)
AAAGCGGCTCCAGAAGGAACCTACA
LOC_Os01g56969
Os.5389.1.S1_s_at--1112--7232Chr01:33235562..33235586 (25 bp)
GTCGCCTACGATGATCTGTTCTGAA
NONE
Os.5389.1.S1_s_at--877--112Chr01:33235593..33235617 (25 bp)
ATAACCAGCCTTCTTTAGGGAGGAG
NONE
Os.5389.1.S1_s_at--977--972Chr01:33235613..33235637 (25 bp)
AGGAGGTGAGACAACCATTCAGGTT
NONE
Os.5389.1.S1_s_at--714--2632Chr01:33235625..33235649 (25 bp)
AACCATTCAGGTTTGTTCTTGTACA
NONE
Os.5389.1.S1_s_at--729--10552Chr01:33235640..33235664 (25 bp)
TTCTTGTACACTGCTAGGGTCTTTA
NONE
Os.5389.1.S1_s_at--900--7852Chr01:33235714..33235738 (25 bp)
GGTAGGTGTTTCTTGTATTCAGCAT
NONE
Os.5389.1.S1_s_at--922--3112Chr01:33235791..33235815 (25 bp)
AATATTGACAGTGCCTTACCATCTT
NONE
Target Sequence 
TTTTAGTTGTACAGGCAAGCGAGGCGCCGNNTGACTTGAGAAGTACAGCTCAAGCCAACCCAGTGGGGGAGAATACGCAT
GATGCGACGAAGAGGAATGCAAGCGAATCTTCAGCGTTCTCGAGCACGAAAGCGGCTCCAGAAGGAACCTACAAAGCTAG
AGAAATAGTCGCCTACGATGATCTGTTCTGAACTTCTAATAACCAGCCTTCTTTAGGGAGGAGGTGAGACAACCATTCAG
GTTTGTTCTTGTACACTGCTAGGGTCTTTAGGTGAGTAAGCTATGGGTATTTTTTAGTGTGTGAAGGTACCTTCAGATGG
GTAGGTGTTTCTTGTATTCAGCATGTATTGTGGAAGTTATCATCAAAACATGAGAATTTATGTATGTTAGATTGTTAATA
TTGACAGTGCCTTACCATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5389.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis