Browse Element(s) Details


Os.19849.1.S1_at

Description gb:NM_191475.1
DB_XREF= gi:34910033
GEN=P0413G02.18
TID=Os.19849.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.19849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0413G02.18 (P0413G02.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0413G02.18 (P0413G02.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5693010/11aspartyl protease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56900Os.10706.1.S1_a_at11/111+33187802..33190344expressed protein
LOC_Os01g56910Os.46009.1.S1_at11/111+33196141..33205044expressed protein
LOC_Os01g56930Os.19849.1.S1_at10/111+33213733..33219492aspartyl protease family protein, putative, expressed
LOC_Os01g56940Os.47361.1.S1_at10/111+33220231..33226565XPG I-region family protein, expressed
LOC_Os01g56949Os.5389.1.S1_s_at11/111+33227739..33229476expressed protein
LOC_Os01g56949Os.5389.1.S1_at11/111+33227739..33229476expressed protein
LOC_Os01g56960OsAffx.23812.1.S1_x_at11/111+33230123..33232511expressed protein
LOC_Os01g56969Os.5389.1.S1_at11/111+33234091..33235585hypothetical protein
LOC_Os01g56969Os.5389.1.S1_s_at4/111+33234091..33235585hypothetical protein
LOC_Os01g56980OsAffx.23812.1.S1_x_at11/111+33237110..33252182LOC495012 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0031225cellular_componentanchored to membrane
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19849.1.S1_at--827--9391Chr01:33218105..33218129 (25 bp)
TCGTTTCCTACCGTGTCACTATATT
LOC_Os01g56930
Os.19849.1.S1_at--898--8931Chr01:33218148..33218172 (25 bp)
TGACGGTGAAGCCAGAGAACTATCT
LOC_Os01g56930
Os.19849.1.S1_at--796--5971Chr01:33218162..33218186 (25 bp)
GAGAACTATCTTTTGCAGCAGGCTT
LOC_Os01g56930
Os.19849.1.S1_at--383--6531Chr01:33218761..33218785 (25 bp)
GATTTTTGTGTATGACTTGGCGAAC
LOC_Os01g56930
Os.19849.1.S1_at--865--5471Chr01:33218782..33218806 (25 bp)
GAACATGCGCATGGGCTGGACTGAC
LOC_Os01g56930
Os.19849.1.S1_at--379--8351Chr01:33218795..33218815 (21 bp)
GGCTGGACTGACTACGACTGTTCGA
LOC_Os01g56930
Os.19849.1.S1_at--569--5731Chr01:33218940..33218960 (21 bp)
GACTGTTCGACGTCGGTGAACGTGA
LOC_Os01g56930
Os.19849.1.S1_at--1011--5491Chr01:33218989..33219013 (25 bp)
GAACACGGGCCAGTTCGACGTGAAC
LOC_Os01g56930
Os.19849.1.S1_at--9--4591Chr01:33219071..33219095 (25 bp)
GCGCTCATTTTTGGCGGCTTCTCAC
LOC_Os01g56930
Os.19849.1.S1_at--1027--8291Chr01:33219086..33219469 (25 bp)
GGCTTCTCACTTTCTGGATTTACAC
LOC_Os01g56930
Os.19849.1.S1_at--672--751Chr01:33219515..33219797 (25 bp)
ATGTAACTGTCTGGTTTTGTCCGCC
NONE
Target Sequence 
TCGTTTCCTACCGTGTCACTATATTTTATGGGTGGTGTTGCAATGACGGTGAAGCCAGAGAACTATCTTTTGCAGCAGGC
TTCTATTGACAACAATGTATTGTGGTGTATTGGTTGGCAAAGGAACCAGGGTCAACAAATAACCATACTCGGAGATCTAG
TTTTGAAGGACAAGATTTTTGTGTATGACTTGGCGAACATGCGCATGGGCTGGACTGACTACGACTGTTCGACGTCGGTG
AACGTGACGACGTCGTCGGGGAAGAACCAGTACGTGAACACGGGCCAGTTCGACGTGAACGGAGCGTCGCCGCGGCCGCC
GTACAGCGGCCTGGTACCTGCCGTAGCGGTCGCCGTCGCGCTCATTTTTGGCGGCTTCTCACTTTCTGGATTTACACCAC
ACGTGGAATTTTCACGGTATATTTTTCCGTATTGGGATGACGATGTAACTGTCTGGTTTTGTCCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis