Browse Element(s) Details


OsAffx.23812.1.S1_x_at

Description gb:NM_191480.1
DB_XREF= gi:34910043
GEN=P0413G02.23
TID=OsAffx.23812.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0413G02.23 (P0413G02.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5696011/11expressed protein
LOC_Os01g5698011/11LOC495012 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56930Os.19849.1.S1_at10/111+33213733..33219492aspartyl protease family protein, putative, expressed
LOC_Os01g56940Os.47361.1.S1_at10/111+33220231..33226565XPG I-region family protein, expressed
LOC_Os01g56949Os.5389.1.S1_s_at11/111+33227739..33229476expressed protein
LOC_Os01g56949Os.5389.1.S1_at11/111+33227739..33229476expressed protein
LOC_Os01g56960OsAffx.23812.1.S1_x_at11/111+33230123..33232511expressed protein
LOC_Os01g56969Os.5389.1.S1_at11/111+33234091..33235585hypothetical protein
LOC_Os01g56969Os.5389.1.S1_s_at4/111+33234091..33235585hypothetical protein
LOC_Os01g56980OsAffx.23812.1.S1_x_at11/111+33237110..33252182LOC495012 protein, putative, expressed
LOC_Os01g56990Os.16916.1.S1_at9/111+33256049..33259634Regulator of chromosome condensation family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23812.1.S1_x_at--825--8672Chr01:33238122..33238146 (25 bp)
TGTGATGGAACCTGAACGACGTGTT
LOC_Os01g56980
OsAffx.23812.1.S1_x_at--942--4092Chr01:33238106..33238130 (25 bp)
CGACGTGTTCGAACAAGGCTCTATT
LOC_Os01g56980
OsAffx.23812.1.S1_x_at--561--7012Chr01:33237774..33237798 (25 bp)
GTACTTCGATACTGCAATTTTGATG
LOC_Os01g56980
OsAffx.23812.1.S1_x_at--161--3992Chr01:33237491..33237515 (25 bp)
CGTGGTGCAGATATAAGTTCCTTAC
LOC_Os01g56980
OsAffx.23812.1.S1_x_at--421--6572Chr01:33237355..33237379 (25 bp)
GATTCATTGCTACCTGATGATCACA
LOC_Os01g56980
OsAffx.23812.1.S1_x_at--31--6632Chr01:33237295..33237319 (25 bp)
GTTGGATCATATCTCACCTTGGACA
LOC_Os01g56980
OsAffx.23812.1.S1_x_at--1086--812Chr01:33237259..33237283 (25 bp)
ATGGTTCGTCCATTTGCAATGCCAG
LOC_Os01g56980
OsAffx.23812.1.S1_x_at--827--9012Chr01:33237245..33237269 (25 bp)
TGCAATGCCAGCTGAAGATTTCCCC
LOC_Os01g56980
OsAffx.23812.1.S1_x_at--875--10572Chr01:33237209..33237233 (25 bp)
TTCTCAATCTTTGGCAGTCCGTTTC
LOC_Os01g56980
OsAffx.23812.1.S1_x_at--828--892Chr01:33237164..33237188 (25 bp)
AGGCGCAAGATTGGTACCCTATCCT
LOC_Os01g56980
OsAffx.23812.1.S1_x_at--181--6992Chr01:33237151..33237175 (25 bp)
GTACCCTATCCTGTTCTTTATCATA
LOC_Os01g56980
Target Sequence 
TGTGATGGAACCTGAACGACGTGTTCGAACAAGGCTCTATTTTACATCAGAATCACATATACATTCTCTAATGAATGTAC
TTCGATACTGCAATTTTGATGAATCTATGGATGGAGAAGAAAGTCTTGTTTGCAAAAATGCTCTAGATAATCTGTTTAAA
ACAAGGGAACTTGACTACATGAGTTACATTGTATTGCGTATGTTCGAGAATACAGAGGTTTCTTTGGAAGACCCAAAAAG
GTTTCGCATAGAAATGACATATAGTCGTGGTGCAGATATAAGTTCCTTACAGTTCTTGAAAAATGTATCCATACAGAGCG
AACATGGAAAAGATTCATTGCTACCTGATGATCACACTATGAAAATTATGGAGCCAGAAAGATTGCAGGAAGTTGGATCA
TATCTCACCTTGGACAAATTTGATAAAATGGTTCGTCCATTTGCAATGCCAGCTGAAGATTTCCCCCCAGCTGCCCCTTC
TCAATCTTTGGCAGTCCGTTTCTGCAAGGATAATGGATTGCAAGGCGCAAGATTGGTACCCTATCCTGTTCTTTATCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23812.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis