Browse Element(s) Details


Os.14351.1.A1_at

Description gb:AK064933.1
DB_XREF= gi:32974951
TID=Os.14351.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000O19, full insert sequence.
FL= gb:AK064933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5706611/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56990Os.16916.1.S1_at9/111+33256049..33259634Regulator of chromosome condensation family protein
LOC_Os01g57004Os.55339.1.S1_at1/111+33261136..33261370NA
LOC_Os01g57020OsAffx.11630.1.S1_at11/111+33266805..33270743expressed protein
LOC_Os01g57020OsAffx.16153.1.S1_at1/111+33266805..33270743expressed protein
LOC_Os01g57030NANA1+33271966..33272172expressed protein
LOC_Os01g57040NANA1+33273310..33273781expressed protein
LOC_Os01g57050OsAffx.2348.1.S1_at11/111+33275255..33275589hypothetical protein
LOC_Os01g57066Os.14351.1.A1_at11/111+33283762..33290138expressed protein
LOC_Os01g57082OsAffx.11631.1.S1_x_at11/111+33292159..33314380Insulinase containing protein, expressed
LOC_Os01g57082Os.26729.1.A1_at11/111+33292159..33314380Insulinase containing protein, expressed
LOC_Os01g57082OsAffx.11631.1.S1_at11/111+33292159..33314380Insulinase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14351.1.A1_at--809--9311Chr01:33289612..33289636 (25 bp)
TCGCCCCAGAGTCAGTCTAAAACTA
LOC_Os01g57066
Os.14351.1.A1_at--922--2511Chr01:33289649..33289673 (25 bp)
AACTTGTGGTGTTTATTCAGCTGCA
LOC_Os01g57066
Os.14351.1.A1_at--319--6951Chr01:33289759..33289783 (25 bp)
GTAGTTATTCATCTGTTCAGTGAGC
LOC_Os01g57066
Os.14351.1.A1_at--856--9931Chr01:33289789..33289813 (25 bp)
TACGGGCTTCATTAACTTGCCCAAG
LOC_Os01g57066
Os.14351.1.A1_at--366--5871Chr01:33289838..33289862 (25 bp)
GAGCCCTGGATTGGCTGTTCCTCGA
LOC_Os01g57066
Os.14351.1.A1_at--1027--10091Chr01:33289874..33289898 (25 bp)
TAGGCTGCTATTCTTTAGACGTCAA
LOC_Os01g57066
Os.14351.1.A1_at--12--5771Chr01:33289891..33289915 (25 bp)
GACGTCAACACGGATGAACCTTTTA
LOC_Os01g57066
Os.14351.1.A1_at--541--8891Chr01:33289946..33289970 (25 bp)
TGAGGTGTATCACTGGTGCCTTTTT
LOC_Os01g57066
Os.14351.1.A1_at--978--6151Chr01:33290004..33290028 (25 bp)
GAGGATTCGACAGCTATACTTTCAT
LOC_Os01g57066
Os.14351.1.A1_at--660--5031Chr01:33290049..33290073 (25 bp)
GCAGATTTGCAACTGGTGCCGGCTA
LOC_Os01g57066
Os.14351.1.A1_at--256--1391Chr01:33290091..33290115 (25 bp)
AGACTATTTCGGCTACGCATACTCT
LOC_Os01g57066
Target Sequence 
TCGCCCCAGAGTCAGTCTAAAACTAACTAAATATTGCAACTTGTGGTGTTTATTCAGCTGCAAGTTGCAAATATTCTCCT
CATGAGATTATACTCCTGGCCAAAGCCCTTGCAGATGATATCAAGTACCGGTACTAAGTTGGTATTTGTAGTTATTCATC
TGTTCAGTGAGCAAATATACGGGCTTCATTAACTTGCCCAAGTGATGGCTGCAACCTTTTGNCATTGAGCCCTGGATTGG
CTGTTCCTCGAGGAGAACAAGTTAGGCTGCTATTCTTTAGACGTCAACACGGATGAACCTTTTAGGAATTGTTTATGAAG
AACGGTTGCATTAGTGAGGTGTATCACTGGTGCCTTTTTCTTTCTGTTTTGGAAATACTTTAGAAAGCTTGAGAGGATTC
GACAGCTATACTTTCATTGTTCAATTCACTGTAAAATGCAGATTTGCAACTGGTGCCGGCTAGAATATAATGGAATAGTA
GACTATTTCGGCTACGCATACTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14351.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis