Browse Element(s) Details


OsAffx.21945.3.S1_at

Description tigr:9629.m01941
TID=OsAffx.21945.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1986010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19820Os.26698.4.S1_x_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.1.S1_a_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.4.S1_s_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19830NANA1+11243704..11243999hypothetical protein
LOC_Os01g19840Os.1082.1.S1_a_at10/111+11246723..1124782060S ribosomal protein L29, putative, expressed
LOC_Os01g19840Os.1082.1.S1_x_at2/111+11246723..1124782060S ribosomal protein L29, putative, expressed
LOC_Os01g19850OsAffx.21945.2.S1_x_at11/111+11250922..11258462cation-chloride co-transporter, putative, expressed
LOC_Os01g19860OsAffx.21945.3.S1_s_at11/111+11260948..11262914hypothetical protein
LOC_Os01g19860OsAffx.21945.3.S1_at10/111+11260948..11262914hypothetical protein
LOC_Os01g19870Os.48010.1.S1_at11/111+11269722..11274395expressed protein
LOC_Os01g19870Os.12462.1.S1_at2/111+11269722..11274395expressed protein
LOC_Os01g19880Os.43043.1.S1_at11/111+11280158..11280795expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21945.3.S1_at--903--9291NONE
TCCGCAGGGCCCAGTGGTGTGAACC
NONE
OsAffx.21945.3.S1_at--542--8411Chr01:11261162..11261183 (22 bp)
GGCCCAGTGGTGTGAACCGTGCAAA
LOC_Os01g19860
OsAffx.21945.3.S1_at--484--4551Chr01:11261161..11261183 (23 bp)
GCCCAGTGGTGTGAACCGTGCAAAA
LOC_Os01g19860
OsAffx.21945.3.S1_at--822--4171Chr01:11261160..11261183 (24 bp)
CCCAGTGGTGTGAACCGTGCAAAAA
LOC_Os01g19860
OsAffx.21945.3.S1_at--837--7491Chr01:11261156..11261180 (25 bp)
GTGGTGTGAACCGTGCAAAAACTGA
LOC_Os01g19860
OsAffx.21945.3.S1_at--891--7731Chr01:11261154..11261178 (25 bp)
GGTGTGAACCGTGCAAAAACTGATT
LOC_Os01g19860
OsAffx.21945.3.S1_at--865--7451Chr01:11261153..11261177 (25 bp)
GTGTGAACCGTGCAAAAACTGATTT
LOC_Os01g19860
OsAffx.21945.3.S1_at--1065--7351Chr01:11261151..11261175 (25 bp)
GTGAACCGTGCAAAAACTGATTTAT
LOC_Os01g19860
OsAffx.21945.3.S1_at--160--1791Chr01:11261147..11261171 (25 bp)
ACCGTGCAAAAACTGATTTATTCAA
LOC_Os01g19860
OsAffx.21945.3.S1_at--533--2391Chr01:11261138..11261162 (25 bp)
AAACTGATTTATTCAATTATCTATA
LOC_Os01g19860
OsAffx.21945.3.S1_at--1158--431Chr01:11261120..11261144 (25 bp)
ATCTATATATTAGGTACATCAAGCC
LOC_Os01g19860
Target Sequence 
TCCGCAGGGCCCAGTGGTGTGAACCGTGCAAAAACTGATTTATTCAATTATCTATATATTAGGTACATCAAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21945.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis