Browse Element(s) Details


Os.48010.1.S1_at

Description gb:NM_189289.1
DB_XREF= gi:34905661
GEN=P0475H04.14
TID=Os.48010.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48010 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0475H04.14 (P0475H04.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0475H04.14 (P0475H04.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1987011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19840Os.1082.1.S1_a_at10/111+11246723..1124782060S ribosomal protein L29, putative, expressed
LOC_Os01g19840Os.1082.1.S1_x_at2/111+11246723..1124782060S ribosomal protein L29, putative, expressed
LOC_Os01g19850OsAffx.21945.2.S1_x_at11/111+11250922..11258462cation-chloride co-transporter, putative, expressed
LOC_Os01g19860OsAffx.21945.3.S1_s_at11/111+11260948..11262914hypothetical protein
LOC_Os01g19860OsAffx.21945.3.S1_at10/111+11260948..11262914hypothetical protein
LOC_Os01g19870Os.48010.1.S1_at11/111+11269722..11274395expressed protein
LOC_Os01g19870Os.12462.1.S1_at2/111+11269722..11274395expressed protein
LOC_Os01g19880Os.43043.1.S1_at11/111+11280158..11280795expressed protein
LOC_Os01g19894Os.38395.3.S1_x_at11/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.2.S1_x_at10/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.2.S1_x_at9/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.4.S1_x_at9/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.4.S1_x_at6/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894OsAffx.3900.1.S1_at5/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894OsAffx.21921.1.S1_at2/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38457.1.S1_s_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.1.S1_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.4.S1_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48010.1.S1_at--922--10451Chr01:11273590..11273614 (25 bp)
TTAGCTTCGCTATTTCCAGGCATTA
LOC_Os01g19870
Os.48010.1.S1_at--519--10671Chr01:11273603..11273627 (25 bp)
TTCCAGGCATTACAGACGCTTTGAT
LOC_Os01g19870
Os.48010.1.S1_at--1143--7671Chr01:11273714..11273738 (25 bp)
GGGTTTAACCCATTATTCTTCAGCT
LOC_Os01g19870
Os.48010.1.S1_at--773--1571Chr01:11273735..11273757 (23 bp)
AGCTAAGCTTCCTATCACGAGTGAC
LOC_Os01g19870
Os.48010.1.S1_at--94--7251Chr01:11273833..11273857 (25 bp)
GTCCCTGAGGGCTGTGTAATTATAC
LOC_Os01g19870
Os.48010.1.S1_at--1162--2811Chr01:11273906..11273930 (25 bp)
AAGTTGATCGCTTCACCTCCAGAGA
LOC_Os01g19870
Os.48010.1.S1_at--59--6451Chr01:11273929..11273953 (25 bp)
GATCAGCTGAGCTTTAGCACAGTGA
LOC_Os01g19870
Os.48010.1.S1_at--613--1951Chr01:11273978..11274002 (25 bp)
ACTGGACTGCAGATATGTTCCTGGA
LOC_Os01g19870
Os.48010.1.S1_at--1119--2291Chr01:11274008..11274031 (24 bp)
AAAGGCGTGACTTCGTTGTCCAGGC
LOC_Os01g19870
Os.48010.1.S1_at--976--5491Chr01:11274186..11274210 (25 bp)
GAACAAATACTACGAAGTCCGCCTC
LOC_Os01g19870
Os.48010.1.S1_at--505--8611Chr01:11274226..11274250 (25 bp)
TGGTGCGCCAGCAACCCAGAAAGAT
LOC_Os01g19870
Target Sequence 
TTAGCTTCGCTATTTCCAGGCATTACAGACGCTTTGATGTCTTTGAGGAAGCAGAGGCCAACAAGGTTGGTGGAAAGTAT
GACAATGCTTCAATCGATTACCAAATAGAATTCTACAAGAGAGAGGGTTTAACCCATTATTCTTCAGCTAAGCTTCCTAT
CACGAGTGACGTCCCTGAGGGCTGTGTAATTATACGGGAGCACATCCCTATCACCAACCTCTTCACGTGCCTTTGGTTTA
ATGAAGTTGATCGCTTCACCTCCAGAGATCAGCTGAGCTTTAGCACAGTGAGAGATAAAATAAGGAAACGAGTTAACTGG
ACTGCAGATATGTTCCTGGATTGCGAAAGGCGTGACTTCGTTGTCCAGGCATATCACAGAGAACTATGGGAACAAATACT
ACGAAGTCCGCCTCCACCCCAGCCTCGTTTGGTGCGCCAGCAACCCAGAAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis