Browse Element(s) Details


OsAffx.21945.2.S1_x_at

Description tigr:9629.m01940
TID=OsAffx.21945.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cation-chloride co-transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1985011/11cation-chloride co-transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19800Os.33687.1.S1_at11/111+11228750..11231589Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g19820Os.26698.4.S1_x_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.1.S1_a_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.4.S1_s_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19830NANA1+11243704..11243999hypothetical protein
LOC_Os01g19840Os.1082.1.S1_a_at10/111+11246723..1124782060S ribosomal protein L29, putative, expressed
LOC_Os01g19840Os.1082.1.S1_x_at2/111+11246723..1124782060S ribosomal protein L29, putative, expressed
LOC_Os01g19850OsAffx.21945.2.S1_x_at11/111+11250922..11258462cation-chloride co-transporter, putative, expressed
LOC_Os01g19860OsAffx.21945.3.S1_s_at11/111+11260948..11262914hypothetical protein
LOC_Os01g19860OsAffx.21945.3.S1_at10/111+11260948..11262914hypothetical protein
LOC_Os01g19870Os.48010.1.S1_at11/111+11269722..11274395expressed protein
LOC_Os01g19870Os.12462.1.S1_at2/111+11269722..11274395expressed protein
LOC_Os01g19880Os.43043.1.S1_at11/111+11280158..11280795expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0015377molecular_functioncation:chloride symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21945.2.S1_x_at--51--3991Chr01:11251498..11251522 (25 bp)
CGGGACAATCGACCTATACTGGATT
LOC_Os01g19850
OsAffx.21945.2.S1_x_at--78--6171Chr01:11251463..11251487 (25 bp)
GAGGATTGATGCTCCTTCTGTCTCA
LOC_Os01g19850
OsAffx.21945.2.S1_x_at--504--2811Chr01:11251404..11251428 (25 bp)
AAGATTCAGGTCTTCTGCATAGCTG
LOC_Os01g19850
OsAffx.21945.2.S1_x_at--30--3431Chr01:11251268..11251292 (25 bp)
CAGATCGCAGCGGTGGCTCGAAGAA
LOC_Os01g19850
OsAffx.21945.2.S1_x_at--485--5491Chr01:11251202..11251226 (25 bp)
GAACATACATTTCTCAGCTGAAGGA
LOC_Os01g19850
OsAffx.21945.2.S1_x_at--953--5511Chr01:11251107..11251131 (25 bp)
GAAAAGTTCCTCTACACGATGCTGA
LOC_Os01g19850
OsAffx.21945.2.S1_x_at--43--1611Chr01:11251082..11251106 (25 bp)
AGCTGAACGCTACTATCCTTAGGCA
LOC_Os01g19850
OsAffx.21945.2.S1_x_at--764--10411Chr01:11251064..11251088 (25 bp)
TTAGGCACTCCAGGATGGCAGTCGT
LOC_Os01g19850
OsAffx.21945.2.S1_x_at--406--8991Chr01:11251010..11251034 (25 bp)
TGAACCACCTGGCATACTGCTACAT
LOC_Os01g19850
OsAffx.21945.2.S1_x_at--656--6411Chr01:11250975..11250999 (25 bp)
GATCTGCTTGTAGAGAACATCCCGA
LOC_Os01g19850
OsAffx.21945.2.S1_x_at--90--5491Chr01:11250961..11250985 (25 bp)
GAACATCCCGAGGATCCTGATAGTT
LOC_Os01g19850
Target Sequence 
CGGGACAATCGACCTATACTGGATTGTGAGGGATGGAGGATTGATGCTCCTTCTGTCTCAGCTCCTACTCACCAAAGAAA
GCTTCGAGAGCTGCAAGATTCAGGTCTTCTGCATAGCTGAAGAAGATACCGAGGCCGAGGAGCTAAAGGCAGACGTCAAA
AAGTTCTTGTACGATCTTAGGATGCAAGCTGATGTGATCGTTGTGACTGTGAAGTCATGGGAAGCAGACCCAGATCGCAG
CGGTGGCTCGAAGAAGGATGACCCTGAGGTGTACAGAAGCGCGCAGAGCAGAATCAGAACATACATTTCTCAGCTGAAGG
AAGCCGCGGAACGCGAACGCCGGCCCCTGATGGAGGGTGGCAAGCAGGTCGTGGTTGATGAACAGAAGGTTGAAAAGTTC
CTCTACACGATGCTGAAGCTGAACGCTACTATCCTTAGGCACTCCAGGATGGCAGTCGTGGTGCTCGTGAGCCTTCCACC
GCCACCACTGAACCACCTGGCATACTGCTACATGGAGTACATGGATCTGCTTGTAGAGAACATCCCGAGGATCCTGATAG
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21945.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis