Browse Element(s) Details


Os.43043.1.S1_at

Description gb:CA754555
DB_XREF= gi:25798594
DB_XREF=BR030001000_PLATE_F04_30_041.ab1
CLONE=BR030001000_PLATE_F04_30_041.ab1
TID=Os.43043.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43043 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0475H04.16 (P0475H04.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1988011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19850OsAffx.21945.2.S1_x_at11/111+11250922..11258462cation-chloride co-transporter, putative, expressed
LOC_Os01g19860OsAffx.21945.3.S1_s_at11/111+11260948..11262914hypothetical protein
LOC_Os01g19860OsAffx.21945.3.S1_at10/111+11260948..11262914hypothetical protein
LOC_Os01g19870Os.48010.1.S1_at11/111+11269722..11274395expressed protein
LOC_Os01g19870Os.12462.1.S1_at2/111+11269722..11274395expressed protein
LOC_Os01g19880Os.43043.1.S1_at11/111+11280158..11280795expressed protein
LOC_Os01g19894Os.38395.3.S1_x_at11/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.2.S1_x_at10/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.2.S1_x_at9/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.4.S1_x_at9/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.4.S1_x_at6/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894OsAffx.3900.1.S1_at5/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894OsAffx.21921.1.S1_at2/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38457.1.S1_s_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.1.S1_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.4.S1_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19910OsAffx.11122.1.S1_at11/111+11304062..11304592hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43043.1.S1_at--130--1351Chr01:11280195..11280219 (25 bp)
AGAGTCACCGCGCATTATCGCCGAT
LOC_Os01g19880
Os.43043.1.S1_at--1108--151Chr01:11280208..11280232 (25 bp)
ATTATCGCCGATTTCGATGGGCAAC
LOC_Os01g19880
Os.43043.1.S1_at--491--4491Chr01:11280214..11280238 (25 bp)
GCCGATTTCGATGGGCAACTCGCTG
LOC_Os01g19880
Os.43043.1.S1_at--872--3211Chr01:11280574..11280598 (25 bp)
CAAGAGGATCTTCCCGGAGGTCGTA
LOC_Os01g19880
Os.43043.1.S1_at--631--9571Chr01:11280582..11280606 (25 bp)
TCTTCCCGGAGGTCGTAGTGGACAT
LOC_Os01g19880
Os.43043.1.S1_at--954--2751Chr01:11280621..11280645 (25 bp)
AAGACGAGATGGGTACCCAGGTCCA
LOC_Os01g19880
Os.43043.1.S1_at--882--11Chr01:11280651..11280675 (25 bp)
AGGCCCAGGCCCATTGTCGTCGGTC
LOC_Os01g19880
Os.43043.1.S1_at--1142--31Chr01:11280663..11280687 (25 bp)
ATTGTCGTCGGTCCACACAGTGGAG
LOC_Os01g19880
Os.43043.1.S1_at--1112--4531Chr01:11280692..11280716 (25 bp)
GCCCTTGATACCATCTATGAGGCGT
LOC_Os01g19880
Os.43043.1.S1_at--1011--9971Chr01:11280700..11280724 (25 bp)
TACCATCTATGAGGCGTGAAAACGT
LOC_Os01g19880
Os.43043.1.S1_at--751--2991Chr01:11280728..11280752 (25 bp)
AATGATTCTTTGTTGGATTAGTGAG
LOC_Os01g19880
Target Sequence 
AGAGTCACCGCGCATTATCGCCGATTTCGATGGGCAACTCGCTGGCGTTGCGGTGCGTCTGTGGCGGCGGCGCCGCGAGG
AGGCCTCTGGTGATCGGGCCGGATGGGCGTCCGGTGTGCGTGGAGGAGGCGGCCACCGGAGCGGCCGAGCTGATGATCGA
GGCGCCCGGGCACGTGGTCGCGCGCGCCGCGGACGCGGCGAAGGAGCGGCGGGTGCGGGCGATGGCGGCCGACGAGCCGC
TCCGCGCCGGCGAGGTGTACCTCCTCGTCCCCGCGAGCCGGGCCGGCGCGAGGCTCGGTGACCGGGAGGTGGAGGCCATC
GGCCGCCTCATCGTCTCCGGCGGCGGCCGCAAGAAAGGGCGGAGCAAGCAGCCCGGCGGCAAGAGGATCTTCCCGGAGGT
CGTAGTGGACATGAGCGCCGCGGAGGAAGACGAGATGGGTACCCAGGTCCAGGCCCAGGCCCAGGCCCATTGTCGTCGGT
CCACACAGTGGAGGCCCGCCCTTGATACCATCTATGAGGCGTGAAAACGTGTAAATGATTCTTTGTTGGATTAGTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis