Browse Element(s) Details


OsAffx.11122.1.S1_at

Description tigr:9629.m01946
TID=OsAffx.11122.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1991011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19880Os.43043.1.S1_at11/111+11280158..11280795expressed protein
LOC_Os01g19894Os.38395.3.S1_x_at11/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.2.S1_x_at10/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.2.S1_x_at9/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.4.S1_x_at9/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.4.S1_x_at6/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894OsAffx.3900.1.S1_at5/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894OsAffx.21921.1.S1_at2/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38457.1.S1_s_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.1.S1_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.4.S1_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19910OsAffx.11122.1.S1_at11/111+11304062..11304592hypothetical protein
LOC_Os01g19920OsAffx.22708.1.S1_x_at5/111+11306223..11308629retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19920OsAffx.22708.2.S1_x_at3/111+11306223..11308629retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19920OsAffx.22708.5.S1_x_at3/111+11306223..11308629retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19920OsAffx.22708.2.S1_at2/111+11306223..11308629retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19930OsAffx.22708.3.S1_x_at9/111+11309758..11310789retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19930OsAffx.22708.4.S1_x_at7/111+11309758..11310789retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19940Os.8545.1.S1_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19940Os.49258.1.S1_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19940Os.8545.1.S1_s_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19940Os.43040.1.S1_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19940Os.43040.1.S1_x_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19950OsAffx.11123.1.S1_at11/111+11318619..11319530hypothetical protein
LOC_Os01g19960Os.46306.1.S1_x_at6/111+11322550..11331709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19960Os.45976.1.S1_at5/111+11322550..11331709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19960Os.45976.1.S1_x_at3/111+11322550..11331709transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11122.1.S1_at--740--6971Chr01:11304100..11304124 (25 bp)
GTCACCTTTTGAAAGGCAACCAACG
LOC_Os01g19910
OsAffx.11122.1.S1_at--471--7651Chr01:11304126..11304150 (25 bp)
GGGAGTCAACGTCGGCCAAGACAAC
LOC_Os01g19910
OsAffx.11122.1.S1_at--290--7091Chr01:11304130..11304154 (25 bp)
GTCAACGTCGGCCAAGACAACGAAA
LOC_Os01g19910
OsAffx.11122.1.S1_at--721--1891Chr01:11304134..11304158 (25 bp)
ACGTCGGCCAAGACAACGAAAACAG
LOC_Os01g19910
OsAffx.11122.1.S1_at--139--5611Chr01:11304145..11304169 (25 bp)
GACAACGAAAACAGCCCAATCCAAA
LOC_Os01g19910
OsAffx.11122.1.S1_at--274--5531Chr01:11304151..11304175 (25 bp)
GAAAACAGCCCAATCCAAAGCATCG
LOC_Os01g19910
OsAffx.11122.1.S1_at--288--2411Chr01:11304153..11304177 (25 bp)
AAACAGCCCAATCCAAAGCATCGAA
LOC_Os01g19910
OsAffx.11122.1.S1_at--104--3391Chr01:11304156..11304180 (25 bp)
CAGCCCAATCCAAAGCATCGAAAGG
LOC_Os01g19910
OsAffx.11122.1.S1_at--1050--3011Chr01:11304162..11304186 (25 bp)
AATCCAAAGCATCGAAAGGGCGAGC
LOC_Os01g19910
OsAffx.11122.1.S1_at--1027--5151Chr01:11304198..11304222 (25 bp)
GCAACGATGACAACGACGCAGGAGA
LOC_Os01g19910
OsAffx.11122.1.S1_at--261--9491Chr01:11304444..11304468 (25 bp)
TCTCCATCGCAGTCGCGAGCCGCAA
LOC_Os01g19910
Target Sequence 
GTCACCTTTTGAAAGGCAACCAACGGGGGAGTCAACGTCGGCCAAGACAACGAAAACAGCCCAATCCAAAGCATCGAAAG
GGCGAGCTGCAACTGGAAGCAACGATGACAACGACGCAGGAGACGGCCCTCGCGTCGCCACCGTCGCCGCGGGCCGCGTC
CGCGCCGCAGCCGCCGCTGAGGACTGGATCCGCGCCACCGCCGTCGCCACGGGCCGCGTCCGCACCGCCGCCATCGCGTC
GGGCCGCAACCACGTCGTCGCCGCCGCCGCGGACCTGATCCGCGCCGCCGCTGCCGCCGCGGACTGGATCCGCGCCGCCG
CCGTCGCCTCGGGTCGTATCCGCGTCTCCATCGCAGTCGCGAGCCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis