Browse Element(s) Details


Os.1082.1.S1_x_at

Description gb:AK105054.1
DB_XREF= gi:32990263
TID=Os.1082.1
CNT=54
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1082 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0475H04.11 (P0475H04.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-042-E09, full insert sequence.
FL= gb:AK105054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g287503/1160S ribosomal protein L29, putative
LOC_Os01g198402/1160S ribosomal protein L29, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28710Os.9610.1.S1_s_at11/115+16754545..16758942expressed protein
LOC_Os05g28720Os.24294.1.A1_at11/115+16764919..16767041pentatricopeptide, putative, expressed
LOC_Os05g28730Os.22596.1.S1_s_at10/115+16769917..16772537Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g28740Os.22312.3.A1_a_at11/115+16778701..16779979universal stress protein family protein, expressed
LOC_Os05g28750Os.1082.1.S1_a_at10/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28750Os.1082.1.S1_x_at3/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28750Os.1082.1.S1_at2/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28760NANA5+16782416..16782751hypothetical protein
LOC_Os05g28770OsAffx.27066.1.S1_at11/115+16787445..16791387expressed protein
LOC_Os05g28770OsAffx.26361.1.S1_x_at1/115+16787445..16791387expressed protein
LOC_Os05g28770OsAffx.26361.1.S1_at1/115+16787445..16791387expressed protein
LOC_Os05g28780Os.51575.1.S1_at10/115+16793895..16795827expressed protein
LOC_Os05g28790NANA5+16798352..16798876retrotransposon protein, putative, LINE subclass
LOC_Os05g28800OsAffx.27068.1.S1_at11/115+16804880..16805768hypothetical protein
LOC_Os05g28800OsAffx.27068.1.S1_x_at11/115+16804880..16805768hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1082.1.S1_x_at--25--6232Chr05:16781691..16781715 (25 bp)
GATGGCCAAGTCGAAGAACCACACG
NONE
Os.1082.1.S1_x_at--696--1932Chr05:16781669..16781693 (25 bp)
ACGGCGCACAACCAGTCGTACAAGG
LOC_Os05g28750
Os.1082.1.S1_x_at--775--1692Chr05:16781659..16781683 (25 bp)
ACCAGTCGTACAAGGCGCACAAGAA
LOC_Os05g28750
Os.1082.1.S1_x_at--867--6151Chr05:16780747..16780771 (25 bp)
GAGGTACTCGAGGAAGCACAACAAG
LOC_Os05g28750
Os.1082.1.S1_x_at--210--5271Chr05:16780670..16780694 (25 bp)
GAATGTTTCTTGTATCTCTGGATCT
NONE
Os.1082.1.S1_x_at--812--6831Chr05:16780666..16780690 (25 bp)
GTTTCTTGTATCTCTGGATCTACAG
NONE
Os.1082.1.S1_x_at--323--9491Chr05:16780656..16780680 (25 bp)
TCTCTGGATCTACAGTTTTGAACCT
NONE
Os.1082.1.S1_x_at--457--3351Chr05:16780532..16780556 (25 bp)
CACCTGAAATATTATCTTCTATAAG
NONE
Os.1082.1.S1_x_at--387--8571Chr05:16780504..16780528 (25 bp)
TGGTTATCCATTTTTAAGGTTGTCT
NONE
Os.1082.1.S1_x_at--19--3591Chr05:16780496..16780520 (25 bp)
CATTTTTAAGGTTGTCTTGTTTGCA
NONE
Os.1082.1.S1_x_at--601--8731Chr05:16780484..16780508 (25 bp)
TGTCTTGTTTGCATTAGCACATCTC
NONE
Target Sequence 
GATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGCATCAAGAAGCCCAAGCGCC
ACCGCCAGACCTCCACCAAGGGGATGGACCCAAAGTTCCTCAGGAACCAGAGGTACTCGAGGAAGCACAACAAGAAGAGT
GGTGAGGCTGAATCCGAGGAGTAAGGTGGAGGAGCCTTTTGGTTATGAATGTTTCTTGTATCTCTGGATCTACAGTTTTG
AACCTATTTCACTGTTCTGTAAGGGCAAAGGAGATTACTATGGTACTTAAGTTTTATCATGCGTNGTTTGGCTCTGTGCA
ACCCAGTTCCATGCTGTTGGATTGCACCTGAAATATTATCTTCTATAAGAATTGGTTATCCATTTTTAAGGTTGTCTTGT
TTGCATTAGCACATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1082.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis