Browse Element(s) Details


Os.33857.2.S1_x_at

Description gb:NM_189276.1
DB_XREF= gi:34905635
GEN=P0475H04.1
TID=Os.33857.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33857 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0475H04.1 (P0475H04.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0475H04.1 (P0475H04.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1976010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19730NANA1+11195715..11196216hypothetical protein
LOC_Os01g19740Os.7872.1.S1_at11/111+11199375..11200109chloroplast protein 12, putative, expressed
LOC_Os01g19740Os.10732.1.S1_s_at1/111+11199375..11200109chloroplast protein 12, putative, expressed
LOC_Os01g19750Os.36822.1.S1_at11/111+11205351..11206589Acidic endochitinase precursor, putative, expressed
LOC_Os01g19760Os.33857.1.S1_at10/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.2.S1_x_at10/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.3.S1_x_at8/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.3.S1_at5/111+11208631..11218178expressed protein
LOC_Os01g19770OsAffx.21963.1.S1_s_at11/111+11218630..11220431stress-inducible membrane pore protein, putative, expressed
LOC_Os01g19780NANA1+11220908..11221678hypothetical protein
LOC_Os01g19790OsAffx.11121.1.S1_at6/111+11224379..11224723hypothetical protein
LOC_Os01g19800Os.33687.1.S1_at11/111+11228750..11231589Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g19820Os.26698.4.S1_x_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.1.S1_a_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.4.S1_s_at11/111+11242031..11243517universal stress protein family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33857.2.S1_x_at--349--1711Chr01:11215647..11215671 (25 bp)
ACCACTGAACTAGATGGCTCAACTG
LOC_Os01g19760
Os.33857.2.S1_x_at--153--871Chr01:11215660..11215684 (25 bp)
ATGGCTCAACTGACATCAATGTGGT
LOC_Os01g19760
Os.33857.2.S1_x_at--1057--5651Chr01:11215671..11215695 (25 bp)
GACATCAATGTGGTTAAGACTAAAA
LOC_Os01g19760
Os.33857.2.S1_x_at--856--5331Chr01:11215697..11215721 (25 bp)
GAAGTACAGAGTTGATATCCTCCGA
LOC_Os01g19760
Os.33857.2.S1_x_at--1080--251NONE
ATATCCTCCGATGTCATATGCACTT
NONE
Os.33857.2.S1_x_at--708--6271Chr01:11216871..11216892 (22 bp)
GATGTCATATGCACTTCCTCCTGAG
LOC_Os01g19760
Os.33857.2.S1_x_at--412--9031Chr01:11216877..11216901 (25 bp)
TGCACTTCCTCCTGAGCACGATGAG
LOC_Os01g19760
Os.33857.2.S1_x_at--276--1511Chr01:11216891..11216915 (25 bp)
AGCACGATGAGGCTGGCACCAAATC
LOC_Os01g19760
Os.33857.2.S1_x_at--98--8351Chr01:11216901..11216925 (25 bp)
GGCTGGCACCAAATCTTTATCTGAA
LOC_Os01g19760
Os.33857.2.S1_x_at--776--8991Chr01:11216922..11216946 (25 bp)
TGAAGAACAATCATCAGCTCACGAT
LOC_Os01g19760
Os.33857.2.S1_x_at--531--1571Chr01:11216937..11216961 (25 bp)
AGCTCACGATGGAAAACCAGACACA
LOC_Os01g19760
Target Sequence 
ACCACTGAACTAGATGGCTCAACTGACATCAATGTGGTTAAGACTAAAAGGAAGTACAGAGTTGATATCCTCCGATGTCA
TATGCACTTCCTCCTGAGCACGATGAGGCTGGCACCAAATCTTTATCTGAAGAACAATCATCAGCTCACGATGGAAAACC
AGACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33857.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis