Browse Element(s) Details


Os.33857.1.S1_at

Description gb:AK073769.1
DB_XREF= gi:32983792
TID=Os.33857.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33857 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0475H04.1 (P0475H04.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067N09, full insert sequence.
FL= gb:AK073769.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1976010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19730NANA1+11195715..11196216hypothetical protein
LOC_Os01g19740Os.7872.1.S1_at11/111+11199375..11200109chloroplast protein 12, putative, expressed
LOC_Os01g19740Os.10732.1.S1_s_at1/111+11199375..11200109chloroplast protein 12, putative, expressed
LOC_Os01g19750Os.36822.1.S1_at11/111+11205351..11206589Acidic endochitinase precursor, putative, expressed
LOC_Os01g19760Os.33857.1.S1_at10/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.2.S1_x_at10/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.3.S1_x_at8/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.3.S1_at5/111+11208631..11218178expressed protein
LOC_Os01g19770OsAffx.21963.1.S1_s_at11/111+11218630..11220431stress-inducible membrane pore protein, putative, expressed
LOC_Os01g19780NANA1+11220908..11221678hypothetical protein
LOC_Os01g19790OsAffx.11121.1.S1_at6/111+11224379..11224723hypothetical protein
LOC_Os01g19800Os.33687.1.S1_at11/111+11228750..11231589Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g19820Os.26698.4.S1_x_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.1.S1_a_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.4.S1_s_at11/111+11242031..11243517universal stress protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33857.1.S1_at--396--7851Chr01:11217145..11217169 (25 bp)
GGTACGTACATATCTGTTTGCTGCA
LOC_Os01g19760
Os.33857.1.S1_at--668--5171Chr01:11217167..11217191 (25 bp)
GCAAGGCATGCGTCCCGAAACGGGT
LOC_Os01g19760
Os.33857.1.S1_at--146--2591Chr01:11217236..11217260 (25 bp)
AACGGGCTGCTGTTTTTCTATGCAC
LOC_Os01g19760
Os.33857.1.S1_at--1045--10411Chr01:11217303..11217327 (25 bp)
TTATCAACCGAGTCTGGCAGAGCGC
LOC_Os01g19760
Os.33857.1.S1_at--688--2891Chr01:11217905..11217929 (25 bp)
AAGGTGCTTACGAGTTCTTTCTTGT
LOC_Os01g19760
Os.33857.1.S1_at--841--9811Chr01:11217964..11217988 (25 bp)
TAGTACTACGTAGATTCCCTGGTCT
LOC_Os01g19760
Os.33857.1.S1_at--638--9311Chr01:11217979..11218003 (25 bp)
TCCCTGGTCTACTTGTTCGAATGAA
LOC_Os01g19760
Os.33857.1.S1_at--203--7571Chr01:11218051..11218075 (25 bp)
GGGTATTTTCCCACCAATGCGTGCA
LOC_Os01g19760
Os.33857.1.S1_at--74--3031Chr01:11218066..11218090 (25 bp)
AATGCGTGCACTCATATTTCACCTC
LOC_Os01g19760
Os.33857.1.S1_at--951--1751Chr01:11218086..11218110 (25 bp)
ACCTCCATATCTCATTTCTGTAGTC
LOC_Os01g19760
Os.33857.1.S1_at--571--1231Chr01:11218164..11218188 (25 bp)
AGTTCCATACTTATGCCTTGTTTGA
NONE
Target Sequence 
GGTACGTACATATCTGTTTGCTGCAAGGCATGCGTCCCGAAACGGGTGATACGTCAGTCTGAGGACTCTTTGAGGGAAGA
TTTTGCTGTTCAACGGGCTGCTGTTTTTCTATGCACTCTGGCCAAATGATGCTTTTACAGGAAATGACAAATTGTAACTT
ATCAACCGAGTCTGGCAGAGCGCATTGCTGAGGCTATTTACATCATTACATGCATCATATGTATTTTTTATTTTTTTGGC
CAACCGATTGTGGAATTTTTTTCCAGTCATCTTGAACGAAGACCTTGATGCTCAAAGGTGCTTACGAGTTCTTTCTTGTG
TAAGATTTGCCTGTGATATACATGAGTGTTGTATAGTACTACGTAGATTCCCTGGTCTACTTGTTCGAATGAAAATTTTA
GCTAGGAAGGATTTGTCGAGAGTGGATGTATTTAACATATGGGTATTTTCCCACCAATGCGTGCACTCATATTTCACCTC
CATATCTCATTTCTGTAGTCAAGAGAGTCAAAGACGTGCAATGTCGATGAAACACACAAATGGCGCATATCACAGTTCCA
TACTTATGCCTTGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis