Browse Element(s) Details

Os.11554.1.S1_at

Description

gb:C20494
DB_XREF= gi:4714529
DB_XREF=C20494
CLONE=R1617
TID=Os.11554.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.11554 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T45730 (A.thaliana) T45730 peroxidase-like protein - Arabidopsis thaliana
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g33080	11/11	Peroxidase family protein, expressed
LOC_Os06g33090	1/11	Peroxidase family protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g33040	NA	NA	6	+	19230469..19233393	transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g33050	Os.10827.1.S1_x_at	9/11	6	+	19245693..19249695	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33050	Os.46055.2.S1_x_at	4/11	6	+	19245693..19249695	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33050	OsAffx.18122.1.S1_x_at	1/11	6	+	19245693..19249695	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33060	OsAffx.13833.1.S1_x_at	11/11	6	+	19250252..19250948	hypothetical protein
LOC_Os06g33070	OsAffx.25936.7.S1_s_at	8/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.1.S1_s_at	7/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.5.S1_x_at	4/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.2.S1_x_at	4/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.1.S1_at	1/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33080	Os.11554.1.S1_at	11/11	6	+	19257150..19258379	Peroxidase family protein, expressed
LOC_Os06g33090	Os.47413.1.S1_x_at	3/11	6	+	19263702..19265386	Peroxidase family protein
LOC_Os06g33090	Os.11554.1.S1_at	1/11	6	+	19263702..19265386	Peroxidase family protein
LOC_Os06g33100	Os.47413.1.S1_at	9/11	6	+	19270273..19271665	Peroxidase family protein, expressed
LOC_Os06g33100	Os.47413.1.S1_x_at	9/11	6	+	19270273..19271665	Peroxidase family protein, expressed
LOC_Os06g33110	OsAffx.20673.1.A1_x_at	2/11	6	+	19273319..19275261	hypothetical protein
LOC_Os06g33110	OsAffx.20689.1.A1_x_at	1/11	6	+	19273319..19275261	hypothetical protein
LOC_Os06g33110	OsAffx.20673.1.A1_at	1/11	6	+	19273319..19275261	hypothetical protein
LOC_Os06g33120	OsAffx.4986.1.S1_at	11/11	6	+	19280461..19281364	transposon MuDR, putative

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Gene Ontology Classification

GO id	Type	Name
GO:0009613	biological_process	response to pest, pathogen or parasite
GO:0004601	molecular_function	peroxidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.11554.1.S1_at--134--845	2	Chr06:19257264..19257288 (25 bp)	GGCCAACACCCATTATTGATGCTCC	LOC_Os06g33080
Os.11554.1.S1_at--1043--247	1	Chr06:19257260..19257284 (25 bp)	AACACCCATTATTGATGCTCCTCTT	LOC_Os06g33080
Os.11554.1.S1_at--895--181	1	Chr06:19257257..19257281 (25 bp)	ACCCATTATTGATGCTCCTCTTGTT	LOC_Os06g33080
Os.11554.1.S1_at--89--433	1	Chr06:19257255..19257279 (25 bp)	CCATTATTGATGCTCCTCTTGTTAA	LOC_Os06g33080
Os.11554.1.S1_at--462--479	1	Chr06:19257244..19257268 (25 bp)	GCTCCTCTTGTTAATTATACTGTCG	LOC_Os06g33080
Os.11554.1.S1_at--149--1017	1	Chr06:19257229..19257253 (25 bp)	TATACTGTCGAGTACAACACAAATA	LOC_Os06g33080
Os.11554.1.S1_at--95--219	1	Chr06:19257213..19257237 (25 bp)	ACACAAATATGTTGGATACTCATTT	LOC_Os06g33080
Os.11554.1.S1_at--241--73	1	Chr06:19257205..19257229 (25 bp)	ATGTTGGATACTCATTTGTAAGTGT	LOC_Os06g33080
Os.11554.1.S1_at--1046--793	1	Chr06:19257200..19257224 (25 bp)	GGATACTCATTTGTAAGTGTGAAAT	LOC_Os06g33080
Os.11554.1.S1_at--329--747	1	Chr06:19257184..19257208 (25 bp)	GTGTGAAATTCCTTTCGATTTGATT	LOC_Os06g33080
Os.11554.1.S1_at--1003--559	1	Chr06:19257180..19257204 (25 bp)	GAAATTCCTTTCGATTTGATTGTGC	LOC_Os06g33080

Target Sequence

GGCCAACACCCATTATTGATGCTCCTCTTGTTAATTATACTGTCGAGTACAACACAAATATGTTGGATACTCATTTGTAA
GTGTGAAATTCCTTTCGATTTGATTGTGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis