Browse Element(s) Details


Os.8100.1.S2_at

Description gb:AK073772.1
DB_XREF= gi:32983795
TID=Os.8100.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8100 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067N18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067N18, full insert sequence.
FL= gb:AK062812.1 gb:AK073772.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0649010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06464Os.54801.1.A1_at11/1112+3099854..3109419expressed protein
LOC_Os12g06464OsAffx.31615.1.S1_at11/1112+3099854..3109419expressed protein
LOC_Os12g06480OsAffx.31616.1.S1_at11/1112+3117268..3121176expressed protein
LOC_Os12g06490Os.8100.1.S1_at10/1112+3127646..3130712Protein kinase domain containing protein, expressed
LOC_Os12g06490Os.8100.1.S2_at10/1112+3127646..3130712Protein kinase domain containing protein, expressed
LOC_Os12g06500OsAffx.31617.1.S1_x_at11/1112+3137359..3137851hypothetical protein
LOC_Os12g06500OsAffx.31617.1.S1_at11/1112+3137359..3137851hypothetical protein
LOC_Os12g06510Os.9447.1.S1_at11/1112+3144036..3148570Calcineurin B-like protein 3, putative, expressed
LOC_Os12g06510OsAffx.23885.1.S1_s_at10/1112+3144036..3148570Calcineurin B-like protein 3, putative, expressed
LOC_Os12g06520OsAffx.19521.1.S1_at10/1112+3152108..3155798bZIP transcriptional activator RSG, putative, expressed
LOC_Os12g06520Os.19640.1.S1_at10/1112+3152108..3155798bZIP transcriptional activator RSG, putative, expressed
LOC_Os12g06520Os.53732.1.S1_a_at1/1112+3152108..3155798bZIP transcriptional activator RSG, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0003700molecular_functiontranscription factor activity
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8100.1.S2_at--627--6391Chr12:3128081..3128105 (25 bp)
GATCGATGCATTCTTGGTCATCCTG
LOC_Os12g06490
Os.8100.1.S2_at--891--6571Chr12:3128057..3128081 (25 bp)
GATTCCTGAATGGACACCGTGTGTC
LOC_Os12g06490
Os.8100.1.S2_at--995--4571Chr12:3127982..3128006 (25 bp)
GCGCTGACCGAGAGTGATTCTGCTT
LOC_Os12g06490
Os.8100.1.S2_at--250--3111Chr12:3127936..3127960 (25 bp)
AATAGTCATAGTTGGCTTCGCTGGT
LOC_Os12g06490
Os.8100.1.S2_at--741--4911Chr12:3127922..3127946 (25 bp)
GCTTCGCTGGTTATGTATCCTTATA
LOC_Os12g06490
Os.8100.1.S2_at--130--8531Chr12:3127877..3127901 (25 bp)
TGGACCTTATGCTTTAGCCACCTGT
LOC_Os12g06490
Os.8100.1.S2_at--644--1771Chr12:3127858..3127882 (25 bp)
ACCTGTGGGCACTCATATTACAATG
LOC_Os12g06490
Os.8100.1.S2_at--647--3191Chr12:3127838..3127862 (25 bp)
CAATGCCCTCGAGATGTGCTGCTGA
LOC_Os12g06490
Os.8100.1.S2_at--595--7311Chr12:3127823..3127847 (25 bp)
GTGCTGCTGAGCATGGAGTTCCTCC
LOC_Os12g06490
Os.8100.1.S2_at--286--1251Chr12:3127672..3127696 (25 bp)
AGTTGTGGCACGTCTGAATTCATAA
LOC_Os12g06490
Os.8100.1.S2_at--312--10411Chr12:3127594..3127618 (25 bp)
TTATTTATTGCACATTCTCCTTCCC
NONE
Target Sequence 
GATCGATGCATTCTTGGTCATCCTGATTCCTGAATGGACACCGTGTGTCGCCATCCGTCAGGTGGTTTCTGAGGGTGCAA
ACGGCTTGANAATTGAGAAGCGCTGACCGAGAGTGATTCTGCTTCCCCAACCGCTGCTACTAACTAATAGTCATAGTTGG
CTTCGCTGGTTATGTATCCTTATAGTATTTTCTTTTAGATGGAGTGGACCTTATGCTTTAGCCACCTGTGGGCACTCATA
TTACAATGCCCTCGAGATGTGCTGCTGAGCATGGAGTTCCTCCGGTGGTGATGATGATGAAAGTTAGGTCTAGTTCAGAT
AATTTATTTGCTAGGAAGGAGCAGCAAAAATGAGAGTAATCAGTCGNAAATGTTGGGTTTTTTTTCATCTTTAATGCAAT
TGCTGAATTAGTTGTGGCACGTCTGAATTCATAATCAGATTGGCTGTGCACTTNTGCANTTTGTTTCCATCGGCTTTATG
CTGCCGGTTTTATTTATTGCACATTCTCCTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8100.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis