Browse Element(s) Details


Os.53732.1.S1_a_at

Description gb:AY224425.1
DB_XREF= gi:29367342
TID=Os.53732.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53732 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) isolate 20135 bZIP-like protein mRNA, complete cds.
PROD=bZIP-like protein
FL= gb:AY224425.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0617011/11Transcription factor RF2a, putative, expressed
LOC_Os12g065201/11bZIP transcriptional activator RSG, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06130Os.57573.1.S1_at11/1111+2905313..2914028PHD-finger family protein, expressed
LOC_Os11g06140Os.53021.1.S1_at11/1111+2921619..2925077Protein kinase domain containing protein, expressed
LOC_Os11g06150Os.55944.1.S1_at11/1111+2928581..2929746expressed protein
LOC_Os11g06159NANA11+2933102..2933350NA
LOC_Os11g06170Os.53732.1.S1_a_at11/1111+2935646..2938722Transcription factor RF2a, putative, expressed
LOC_Os11g06170Os.53732.2.S1_at4/1111+2935646..2938722Transcription factor RF2a, putative, expressed
LOC_Os11g06180OsAffx.18704.1.S1_at11/1111+2946066..2948127GRAS family transcription factor containing protein
LOC_Os11g06190Os.24665.1.S1_at11/1111+2948973..2954715expressed protein
LOC_Os11g06190Os.24665.1.S2_at10/1111+2948973..2954715expressed protein
LOC_Os11g06200OsAffx.30838.1.S1_at11/1111+2957362..2961572hypothetical protein
LOC_Os11g06210NANA11+2962130..2963611NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53732.1.S1_a_at--550--5351Chr11:2936058..2936082 (25 bp)
GAAGATCAAGTACACCGGTGAGCTG
LOC_Os11g06170
Os.53732.1.S1_a_at--1105--1391Chr11:2936105..2936129 (25 bp)
AGACAGAGGCAACCACGCTTTCAAC
LOC_Os11g06170
Os.53732.1.S1_a_at--1016--1891Chr11:2937906..2937930 (25 bp)
ACGTCTGGCCTAACTGCTGAGAACA
LOC_Os11g06170
Os.53732.1.S1_a_at--810--1351Chr11:2937930..2937954 (25 bp)
AGAGAGCTCAAACTCCGGTTGCAGT
LOC_Os11g06170
Os.53732.1.S1_a_at--141--2552Chr12:3155011..3155030 (20 bp)
AACTCCGGTTGCAGTCCATGGAAGA
LOC_Os12g06520
Os.53732.1.S1_a_at--1063--2691Chr11:2937967..2938200 (25 bp)
AAGCTAAACTTCGAGATGCTCTGAA
LOC_Os11g06170
Os.53732.1.S1_a_at--578--2371Chr11:2938267..2938291 (25 bp)
AAACTCCTTCAATGGAGGACTCCAG
LOC_Os11g06170
Os.53732.1.S1_a_at--698--7631Chr11:2938363..2938387 (25 bp)
GGGACGTCATCACCACCCAAATAAT
LOC_Os11g06170
Os.53732.1.S1_a_at--961--3071Chr11:2938382..2938406 (25 bp)
AATAATCCCCATAACTCTTTGAACG
LOC_Os11g06170
Os.53732.1.S1_a_at--631--2011Chr11:2938395..2938419 (25 bp)
ACTCTTTGAACGGAGGCCAATCGAT
LOC_Os11g06170
Os.53732.1.S1_a_at--199--6291Chr11:2938417..2938441 (25 bp)
GATGAGCGGCCAGACCCTAAATGAC
LOC_Os11g06170
Target Sequence 
GAAGATCAAGTACACCGGTGAGCTGGAGAGGAAGGTGCAGACGCTGCAGACAGAGGCAACCACGCTTTCAACACAGCTCA
CGCTGCTCCAGAGGGACACGTCTGGCCTAACTGCTGAGAACAGAGAGCTCAAACTCCGGTTGCAGTCCATGGAAGAACAA
GCTAAACTTCGAGATGCTCTGAATGACGCCCTACGAGAAGAAGTTCAGCGGCTTAAGATAGCGGCAGGCCAAGTTCCAAA
CATGAACGGAAACTCCTTCAATGGAGGACTCCAGCAGCAGCAGCAGCAGCAGATGCCGACCTATTTCTCGCAGCAGCAGC
AGATGCACTACTTAAGTGGCCACCAGGGACGTCATCACCACCCAAATAATCCCCATAACTCTTTGAACGGAGGCCAATCG
ATGAGCGGCCAGACCCTAAATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53732.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis