Browse Element(s) Details


Os.53732.2.S1_at

Description gb:AK099600.1
DB_XREF= gi:32984809
TID=Os.53732.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53732 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 20135 bZIP-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047E21, full insert sequence.
FL= gb:AK099600.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g061704/11Transcription factor RF2a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06130Os.57573.1.S1_at11/1111+2905313..2914028PHD-finger family protein, expressed
LOC_Os11g06140Os.53021.1.S1_at11/1111+2921619..2925077Protein kinase domain containing protein, expressed
LOC_Os11g06150Os.55944.1.S1_at11/1111+2928581..2929746expressed protein
LOC_Os11g06159NANA11+2933102..2933350NA
LOC_Os11g06170Os.53732.1.S1_a_at11/1111+2935646..2938722Transcription factor RF2a, putative, expressed
LOC_Os11g06170Os.53732.2.S1_at4/1111+2935646..2938722Transcription factor RF2a, putative, expressed
LOC_Os11g06180OsAffx.18704.1.S1_at11/1111+2946066..2948127GRAS family transcription factor containing protein
LOC_Os11g06190Os.24665.1.S1_at11/1111+2948973..2954715expressed protein
LOC_Os11g06190Os.24665.1.S2_at10/1111+2948973..2954715expressed protein
LOC_Os11g06200OsAffx.30838.1.S1_at11/1111+2957362..2961572hypothetical protein
LOC_Os11g06210NANA11+2962130..2963611NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53732.2.S1_at--870--9591Chr11:2938547..2938571 (25 bp)
TCATTCGTAGGGTAGCTAGCTGATC
LOC_Os11g06170
Os.53732.2.S1_at--353--4851Chr11:2938561..2938585 (25 bp)
GCTAGCTGATCTTTGTACCATTACT
LOC_Os11g06170
Os.53732.2.S1_at--1076--5511Chr11:2938586..2938610 (25 bp)
GAAAATGCAATTCATCCTCCTGTTC
LOC_Os11g06170
Os.53732.2.S1_at--742--3071Chr11:2938611..2938635 (25 bp)
AATCATCTGTTAATGCCTTAGTCTG
LOC_Os11g06170
Os.53732.2.S1_at--808--9291NONE
TCCCCTACGCAGACGAGTAACACAA
NONE
Os.53732.2.S1_at--260--6071NONE
GAGTAACACAAAGGCCGAACGACGA
NONE
Os.53732.2.S1_at--66--1871NONE
ACGACGTCCACGTAGGCACGATGAG
NONE
Os.53732.2.S1_at--693--6331NONE
GATGCATGAGCGTAATCGTAACAGG
NONE
Os.53732.2.S1_at--421--2731NONE
AAGCAACGAACATACAACACGCAGT
NONE
Os.53732.2.S1_at--653--9851NONE
TACAACACGCAGTAGGCAAACAGCA
NONE
Os.53732.2.S1_at--570--5171NONE
GCAAGAGGCCCAGACTAGAGAGACA
NONE
Target Sequence 
TCATTCGTAGGGTAGCTAGCTGATCTTTGTACCATTACTGAAAATGCAATTCATCCTCCTGTTCAATCATCTGTTAATGC
CTTAGTCTGAAGGTTGNAAGAACTGTGTTTAACNATGTTTGCGNACGGTTGTTTTGTAAAGATGTTGTTATAGTGAATGG
AATGGGTTCTGATNGAAAAANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGAAGACATCCCCTACGCAGACGAG
TAACACAAAGGCCGAACGACGACGTCCACGTAGGCACGATGAGATGCATGAGCGTAATCGTAACAGGTAATTAGAAAGAC
ATACAAGCAACGAACATACAACACGCAGTAGGCAAACAGCAAGAGGCCCAGACTAGAGAGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53732.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis