Browse Element(s) Details


Os.57573.1.S1_at

Description gb:AK065597.1
DB_XREF= gi:32975615
TID=Os.57573.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57573 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013029P19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013029P19, full insert sequence.
FL= gb:AK065597.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0613011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06070Os.51879.1.S1_at11/1111+2890454..2892054expressed protein
LOC_Os11g06080OsAffx.30837.1.S1_at11/1111+2895222..2896605hypothetical protein
LOC_Os11g06090OsAffx.18701.1.S1_at11/1111+2897488..2898060hypothetical protein
LOC_Os11g06100OsAffx.18702.1.S1_at11/1111+2901022..2901744hypothetical protein
LOC_Os11g06110OsAffx.18703.1.S1_at11/1111+2903838..2904566hypothetical protein
LOC_Os11g06130Os.57573.1.S1_at11/1111+2905313..2914028PHD-finger family protein, expressed
LOC_Os11g06140Os.53021.1.S1_at11/1111+2921619..2925077Protein kinase domain containing protein, expressed
LOC_Os11g06150Os.55944.1.S1_at11/1111+2928581..2929746expressed protein
LOC_Os11g06159NANA11+2933102..2933350NA
LOC_Os11g06170Os.53732.1.S1_a_at11/1111+2935646..2938722Transcription factor RF2a, putative, expressed
LOC_Os11g06170Os.53732.2.S1_at4/1111+2935646..2938722Transcription factor RF2a, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57573.1.S1_at--54--7251Chr11:2905884..2905908 (25 bp)
GTCCTCCCTGTTCCATTTTAGAAGA
LOC_Os11g06130
Os.57573.1.S1_at--646--1451Chr11:2905865..2905889 (25 bp)
AGAAGATTCAGCATCCGAGCCGTTT
LOC_Os11g06130
Os.57573.1.S1_at--1058--10531Chr11:2905837..2905861 (25 bp)
TTCATCATTCCACAGACAGCATCGA
LOC_Os11g06130
Os.57573.1.S1_at--277--10351Chr11:2905766..2905790 (25 bp)
TTTTTGCACACTGGGTTGGCGAAAC
LOC_Os11g06130
Os.57573.1.S1_at--211--511Chr11:2905685..2905709 (25 bp)
ATCGTGTCGTGGTTACTGTTTCTAG
LOC_Os11g06130
Os.57573.1.S1_at--450--6791Chr11:2905661..2905685 (25 bp)
GTTATGGTGCAGCACATTGACCCCT
LOC_Os11g06130
Os.57573.1.S1_at--418--2671Chr11:2905624..2905648 (25 bp)
AAGCGCAAGCTATGAAGTGGTCCTA
LOC_Os11g06130
Os.57573.1.S1_at--329--5891Chr11:2905584..2905608 (25 bp)
GAGCGAGTTCATTGCGCCTTTGGTG
LOC_Os11g06130
Os.57573.1.S1_at--295--2331Chr11:2905434..2905458 (25 bp)
AAAGTTTCACTGCACTCTCTGGTGA
LOC_Os11g06130
Os.57573.1.S1_at--62--8831Chr11:2905373..2905397 (25 bp)
TGATTCTTAAGCAACCTCACCTAGA
LOC_Os11g06130
Os.57573.1.S1_at--905--8991Chr11:2905337..2905361 (25 bp)
TGAAGTGCCATCACTACTCTGCAAG
LOC_Os11g06130
Target Sequence 
GTCCTCCCTGTTCCATTTTAGAAGATTCAGCATCCGAGCCGTTTGCCTTCATCATTCCACAGACAGCATCGATCCAAGGA
GCTTATTCAAGAGACTGAAAATGAAGATGGACTGTTGTTTTTTGCACACTGGGTTGGCGAAACCTTGGCCTAGGAGGCAC
TGATAATGGTGTAGGACAAGAACTTGGTCATGATGATCGATCGTGTCGTGGTTACTGTTTCTAGTTATGGTGCAGCACAT
TGACCCCTCTCCTGGGGTAAAAGCGCAAGCTATGAAGTGGTCCTAAAACTTTTTACCATGGAGCGAGTTCATTGCGCCTT
TGGTGGCTATGTGCTGTTTTACATGAATCTCTAGTTAAACCTCCTTTTTTTGATGACCGAGCTGTGGACTGTAGTTGTCC
CTGGCTGTTCAGGATGTATCATCCTACTCAATCAGAGTTGAATTGCCCCCAAAGTTTCACTGCACTCTCTGGTGATTGTC
ATCAGTAAAACTTGCAGCATGAATTTGTACATGATTCTTAAGCAACCTCACCTAGAACTGTCATGCATGAAGTGCCATCA
CTACTCTGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis