Browse Element(s) Details


Os.51879.1.S1_at

Description gb:AK064153.1
DB_XREF= gi:32974171
TID=Os.51879.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51879 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-E08, full insert sequence.
FL= gb:AK064153.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0607011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06050OsAffx.7012.1.S1_at11/1111+2868808..2871684hypothetical protein
LOC_Os11g06059NANA11+2872261..2872888NA
LOC_Os11g06070Os.51879.1.S1_at11/1111+2890454..2892054expressed protein
LOC_Os11g06080OsAffx.30837.1.S1_at11/1111+2895222..2896605hypothetical protein
LOC_Os11g06090OsAffx.18701.1.S1_at11/1111+2897488..2898060hypothetical protein
LOC_Os11g06100OsAffx.18702.1.S1_at11/1111+2901022..2901744hypothetical protein
LOC_Os11g06110OsAffx.18703.1.S1_at11/1111+2903838..2904566hypothetical protein
LOC_Os11g06130Os.57573.1.S1_at11/1111+2905313..2914028PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51879.1.S1_at--991--1931Chr11:2891338..2891362 (25 bp)
ACGGCATGGCTGGTCTTCACTGAGA
LOC_Os11g06070
Os.51879.1.S1_at--910--6431Chr11:2891388..2891412 (25 bp)
GATCATCGTTTTGGCGGAGGTCTCA
LOC_Os11g06070
Os.51879.1.S1_at--582--3171Chr11:2891412..2891436 (25 bp)
AATTGGGACGTGCTTCATCTCATAC
LOC_Os11g06070
Os.51879.1.S1_at--922--10191Chr11:2891445..2891469 (25 bp)
TATATTGCTCTCTGTGGGTTTGCTC
LOC_Os11g06070
Os.51879.1.S1_at--483--6491Chr11:2891473..2891497 (25 bp)
GATACCTTTGTCTCTCATGATACCA
LOC_Os11g06070
Os.51879.1.S1_at--938--3511Chr11:2891488..2891512 (25 bp)
CATGATACCATCGTCTTCAAGGCTG
LOC_Os11g06070
Os.51879.1.S1_at--953--4711Chr11:2891509..2891533 (25 bp)
GCTGGTTCATATTCAATTGCGCTCT
LOC_Os11g06070
Os.51879.1.S1_at--214--10391Chr11:2891544..2891568 (25 bp)
TTTTCTGCTTATCGCCATGTTTGAG
LOC_Os11g06070
Os.51879.1.S1_at--37--1371Chr11:2891567..2891591 (25 bp)
AGAGCAAACTTCTTGGCTTGTCCGT
LOC_Os11g06070
Os.51879.1.S1_at--148--9251Chr11:2891587..2891611 (25 bp)
TCCGTGCTTTTACTCATACCAATGG
LOC_Os11g06070
Os.51879.1.S1_at--149--9951Chr11:2891603..2891627 (25 bp)
TACCAATGGCGATGGCTGGGTTCCT
LOC_Os11g06070
Target Sequence 
ACGGCATGGCTGGTCTTCACTGAGATGGGCAGCATAAGCACGGCCACGGTGATCATCGTTTTGGCGGAGGTCTCAATTGG
GACGTGCTTCATCTCATACCTGTGGAGTATATTGCTCTCTGTGGGTTTGCTCCACGATACCTTTGTCTCTCATGATACCA
TCGTCTTCAAGGCTGGTTCATATTCAATTGCGCTCTACTTCCTTGCTTTTCTGCTTATCGCCATGTTTGAGAGCAAACTT
CTTGGCTTGTCCGTGCTTTTACTCATACCAATGGCGATGGCTGGGTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis