Browse Element(s) Details


OsAffx.18703.1.S1_at

Description tigr:9639.m00537
TID=OsAffx.18703.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0611011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06070Os.51879.1.S1_at11/1111+2890454..2892054expressed protein
LOC_Os11g06080OsAffx.30837.1.S1_at11/1111+2895222..2896605hypothetical protein
LOC_Os11g06090OsAffx.18701.1.S1_at11/1111+2897488..2898060hypothetical protein
LOC_Os11g06100OsAffx.18702.1.S1_at11/1111+2901022..2901744hypothetical protein
LOC_Os11g06110OsAffx.18703.1.S1_at11/1111+2903838..2904566hypothetical protein
LOC_Os11g06130Os.57573.1.S1_at11/1111+2905313..2914028PHD-finger family protein, expressed
LOC_Os11g06140Os.53021.1.S1_at11/1111+2921619..2925077Protein kinase domain containing protein, expressed
LOC_Os11g06150Os.55944.1.S1_at11/1111+2928581..2929746expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18703.1.S1_at--239--8331Chr11:2903980..2904004 (25 bp)
GGCTCGGAGAGGTCTACAACAGCAT
LOC_Os11g06110
OsAffx.18703.1.S1_at--886--8171Chr11:2904074..2904098 (25 bp)
GGAAGAACTTGACATGTCCCTCCTG
LOC_Os11g06110
OsAffx.18703.1.S1_at--425--9111Chr11:2904097..2904121 (25 bp)
TGCTGATTGATCTCTGCAATGCCAT
LOC_Os11g06110
OsAffx.18703.1.S1_at--421--6311Chr11:2904146..2904170 (25 bp)
GATGAGCATCCATGAGCTGCAGCTA
LOC_Os11g06110
OsAffx.18703.1.S1_at--389--1611Chr11:2904160..2904184 (25 bp)
AGCTGCAGCTACTCCTCAAGAGAGG
LOC_Os11g06110
OsAffx.18703.1.S1_at--382--6051Chr11:2904184..2904208 (25 bp)
GAGATTCTGTGGCAGTTCACAACAA
LOC_Os11g06110
OsAffx.18703.1.S1_at--332--3231Chr11:2904206..2904230 (25 bp)
CAAGATCGAGTCTTTTGTCCGGCTC
LOC_Os11g06110
OsAffx.18703.1.S1_at--796--5611Chr11:2904263..2904287 (25 bp)
GACAAGCATTGGAGCCATCTCAGAG
LOC_Os11g06110
OsAffx.18703.1.S1_at--185--8731Chr11:2904332..2904356 (25 bp)
TGTCTCTGTGCTTGAATCCACATCT
LOC_Os11g06110
OsAffx.18703.1.S1_at--1010--3311Chr11:2904350..2904374 (25 bp)
CACATCTCTTCTGTTGCCAAAGCAG
LOC_Os11g06110
OsAffx.18703.1.S1_at--39--8591Chr11:2904399..2904423 (25 bp)
TGGTCTCTGGTGTCCAAGAGGTTTC
LOC_Os11g06110
Target Sequence 
GGCTCGGAGAGGTCTACAACAGCATAGAGGAGATCATGTTCTTGCCCAGCAACCAAGCTGGCATCTCCTTGCACCAGCAG
AGGAAGATGGTGGAGGAAGAACTTGACATGTCCCTCCTGCTGATTGATCTCTGCAATGCCATGCAAGAGAGCTTATCAGA
GATGAAGATGAGCATCCATGAGCTGCAGCTACTCCTCAAGAGAGGAGATTCTGTGGCAGTTCACAACAAGATCGAGTCTT
TTGTCCGGCTCGCGAAGAAGGCGCAGAAGATGCCATTCAAGAAGACAAGCATTGGAGCCATCTCAGAGAGTTGCAAGATG
ATCAGGCTACTGGGAGAAGCCAGAGAGATGGCTGTCTCTGTGCTTGAATCCACATCTCTTCTGTTGCCAAAGCAGATTGC
CAAGAACAGTGCAAGCAAATGGTCTCTGGTGTCCAAGAGGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18703.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis