Browse Element(s) Details


Os.53021.1.S1_at

Description gb:AK070490.1
DB_XREF= gi:32980514
TID=Os.53021.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023048G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048G14, full insert sequence.
FL= gb:AK070490.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0614011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06090OsAffx.18701.1.S1_at11/1111+2897488..2898060hypothetical protein
LOC_Os11g06100OsAffx.18702.1.S1_at11/1111+2901022..2901744hypothetical protein
LOC_Os11g06110OsAffx.18703.1.S1_at11/1111+2903838..2904566hypothetical protein
LOC_Os11g06130Os.57573.1.S1_at11/1111+2905313..2914028PHD-finger family protein, expressed
LOC_Os11g06140Os.53021.1.S1_at11/1111+2921619..2925077Protein kinase domain containing protein, expressed
LOC_Os11g06150Os.55944.1.S1_at11/1111+2928581..2929746expressed protein
LOC_Os11g06159NANA11+2933102..2933350NA
LOC_Os11g06170Os.53732.1.S1_a_at11/1111+2935646..2938722Transcription factor RF2a, putative, expressed
LOC_Os11g06170Os.53732.2.S1_at4/1111+2935646..2938722Transcription factor RF2a, putative, expressed
LOC_Os11g06180OsAffx.18704.1.S1_at11/1111+2946066..2948127GRAS family transcription factor containing protein
LOC_Os11g06190Os.24665.1.S1_at11/1111+2948973..2954715expressed protein
LOC_Os11g06190Os.24665.1.S2_at10/1111+2948973..2954715expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0003700molecular_functiontranscription factor activity
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53021.1.S1_at--575--3191Chr11:2922242..2922266 (25 bp)
CAATCTTTCATCTTGGTGCTTCAGA
LOC_Os11g06140
Os.53021.1.S1_at--803--2611Chr11:2922179..2922203 (25 bp)
AACCCTGTCATGCTGTTTCTGCGAT
LOC_Os11g06140
Os.53021.1.S1_at--980--2731Chr11:2922019..2922043 (25 bp)
AAGAATGTTCAGTTCCCCTTTGACA
LOC_Os11g06140
Os.53021.1.S1_at--769--2331Chr11:2921989..2922013 (25 bp)
AAAGATACCAGCCTGTCGGTGTCCA
LOC_Os11g06140
Os.53021.1.S1_at--931--2931Chr11:2921934..2921958 (25 bp)
AATGGAACAACCCTGTCTTGGCCGA
LOC_Os11g06140
Os.53021.1.S1_at--487--8831Chr11:2921907..2921931 (25 bp)
TGATAGACGCCTTCTTACTACACAT
LOC_Os11g06140
Os.53021.1.S1_at--994--6251Chr11:2921846..2921870 (25 bp)
GATGTTGCCAAGTTCTTCCTAGGGA
LOC_Os11g06140
Os.53021.1.S1_at--767--6111Chr11:2921823..2921847 (25 bp)
GAGTGAGTTGTCCAGTTTTCCCCAT
LOC_Os11g06140
Os.53021.1.S1_at--1131--10651Chr11:2921806..2921830 (25 bp)
TTCCCCATTTCGGTGGCATGCAGAA
LOC_Os11g06140
Os.53021.1.S1_at--1089--3091Chr11:2921783..2921807 (25 bp)
AATATGGTTCATTCTCCTTGGTGCA
LOC_Os11g06140
Os.53021.1.S1_at--494--6471Chr11:2921621..2921645 (25 bp)
GATAACGGTGCTGCCAATGCTGTAT
LOC_Os11g06140
Target Sequence 
CAATCTTTCATCTTGGTGCTTCAGAAGAGTGATTTTTTGTTGGAAGGGAACATGAGCACCACCAACCCTGTCATGCTGTT
TCTGCGATTCCCTGGTCCTGATGGTAAGTTCAAGAATGTTCAGTTCCCCTTTGACATGGAGAAAGATACCAGCCTGTCGG
TGTCCACTGAAATGGTTGAGCAGCTTGAGCTGCCTGAATGGAACAACCCTGTCTTGGCCGAGTTGATAGACGCCTTCTTA
CTACACATTTTGCCCAGTTGGAAACCCTGTGTTAAAGTTGGAAAGATGTTGCCAAGTTCTTCCTAGGGAGTGAGTTGTCC
AGTTTTCCCCATTTCGGTGGCATGCAGAATATGGTTCATTCTCCTTGGTGCATGCTCAAATCTCAGCGCCGTGGTTTTCA
CTGACGATTGAGAAAATTTGTACAGAATTACTGCTAGGGAAGAGTTCTTAATAGAGTCGATGAATTCTTGATTTTAGCTG
TTGTAGCCTGTATGTGAATTCCTGCATAGGATAACGGTGCTGCCAATGCTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis