Browse Element(s) Details


OsAffx.31618.1.S1_at

Description tigr:9640.m00578
TID=OsAffx.31618.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0656011/11expressed protein
LOC_Os12g067401/11F-box protein interaction domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06520OsAffx.19521.1.S1_at10/1112+3152108..3155798bZIP transcriptional activator RSG, putative, expressed
LOC_Os12g06520Os.19640.1.S1_at10/1112+3152108..3155798bZIP transcriptional activator RSG, putative, expressed
LOC_Os12g06520Os.53732.1.S1_a_at1/1112+3152108..3155798bZIP transcriptional activator RSG, putative, expressed
LOC_Os12g06530Os.46012.2.S1_x_at9/1112+3158983..3164652retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06530Os.46012.3.S1_x_at6/1112+3158983..3164652retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06530Os.27088.1.A1_x_at5/1112+3158983..3164652retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06540OsAffx.19522.1.S1_at11/1112+3169550..3171222GRAS family transcription factor containing protein
LOC_Os12g06550Os.55421.1.S1_at11/1112+3174209..3177222expressed protein
LOC_Os12g06560OsAffx.31618.1.S1_at11/1112+3178993..3183721expressed protein
LOC_Os12g06570OsAffx.31619.1.S1_at11/1112+3185850..3189005Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os12g06580NANA12+3191370..3193178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06590NANA12+3194787..3195905retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06600NANA12+3197665..3199653retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06610Os.11568.2.S1_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed
LOC_Os12g06610Os.11568.1.A1_x_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed
LOC_Os12g06620Os.27815.1.S1_at11/1112+3207503..3210748PBS lyase HEAT-like repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31618.1.S1_at--144--7931Chr12:3179857..3179881 (25 bp)
GGATATCCAGACCTTAAGTCCCTGT
LOC_Os12g06560
OsAffx.31618.1.S1_at--77--2851Chr12:3179842..3179866 (25 bp)
AAGTCCCTGTTGCAGATTATGCCTG
LOC_Os12g06560
OsAffx.31618.1.S1_at--744--6191Chr12:3179713..3179737 (25 bp)
GAGGAACTTGGTCCTGTATCTGCTA
LOC_Os12g06560
OsAffx.31618.1.S1_at--1095--6891Chr12:3179698..3179722 (25 bp)
GTATCTGCTACCACTGAAACTGTGC
LOC_Os12g06560
OsAffx.31618.1.S1_at--846--2332Chr12:3281639..3281663 (25 bp)
AAAGAAATGTGCTACCGTCCTCCTA
LOC_Os12g06740
OsAffx.31618.1.S1_at--445--2791Chr12:3179580..3179604 (25 bp)
AAGAGGCTGAAGCAAGCTCGCTCCT
LOC_Os12g06560
OsAffx.31618.1.S1_at--718--6111Chr12:3179471..3179495 (25 bp)
GAGTGACCATGGCTATCTTGACAAT
LOC_Os12g06560
OsAffx.31618.1.S1_at--653--10151Chr12:3179458..3179482 (25 bp)
TATCTTGACAATCTGACCGGAGGAA
LOC_Os12g06560
OsAffx.31618.1.S1_at--386--8151Chr12:3179437..3179461 (25 bp)
GGAAATGCACCGAAGCCTACAAGGC
LOC_Os12g06560
OsAffx.31618.1.S1_at--559--2491Chr12:3179403..3179427 (25 bp)
AACAGTACTCTTTCGTGTCAGACTC
LOC_Os12g06560
OsAffx.31618.1.S1_at--966--8891Chr12:3179348..3179372 (25 bp)
TGAGAGCGTCTTGGGCAGCTTGCAA
LOC_Os12g06560
Target Sequence 
GGATATCCAGACCTTAAGTCCCTGTTGCAGATTATGCCTGGTGTGAGAGTAAAATTTCCAAGGGTTCTACCTGCAGAAAA
CGGAAATGGCCAAGCTGGCAGCAAGGGCAATGGAAATCAAAGTAATGGCGATGACTTTGTTTGGGAGGAACTTGGTCCTG
TATCTGCTACCACTGAAACTGTGCAAACTGTTGACAAAGAAATGTGCTACCGTCCTCCTACTCTTTCAGATGATGATTTT
TCAGAGGATGAGAACCATGCAGACCAGCAGCCTAGAAAAGAGGCTGAAGCAAGCTCGCTCCTCCAAATTATTGATTCCTG
GCACAATAGTAAGGATGTCTCTAGCAAAAAAACTCAAGACATTGATGGGCTTGTTGATTGTTCAAGGAGTGACCATGGCT
ATCTTGACAATCTGACCGGAGGAAATGCACCGAAGCCTACAAGGCCACAGCATAAACAGTACTCTTTCGTGTCAGACTCG
GAAGAAGATACAGAGAAGGGTAAGCTAGTTGAGAGCGTCTTGGGCAGCTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis