Browse Element(s) Details


Os.11568.1.A1_x_at

Description gb:AK101255.1
DB_XREF= gi:32986464
TID=Os.11568.1
CNT=1
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.11568 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033032G09, full insert sequence.
FL= gb:AK101255.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0661011/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06550Os.55421.1.S1_at11/1112+3174209..3177222expressed protein
LOC_Os12g06560OsAffx.31618.1.S1_at11/1112+3178993..3183721expressed protein
LOC_Os12g06570OsAffx.31619.1.S1_at11/1112+3185850..3189005Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os12g06580NANA12+3191370..3193178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06590NANA12+3194787..3195905retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06600NANA12+3197665..3199653retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06610Os.11568.2.S1_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed
LOC_Os12g06610Os.11568.1.A1_x_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed
LOC_Os12g06620Os.27815.1.S1_at11/1112+3207503..3210748PBS lyase HEAT-like repeat family protein, expressed
LOC_Os12g06630Os.12718.1.S1_at11/1112+3211531..3216695Tubby protein, putative, expressed
LOC_Os12g06630Os.52835.2.S1_at1/1112+3211531..3216695Tubby protein, putative, expressed
LOC_Os12g06640Os.10361.1.S1_at11/1112+3217992..3221887expressed protein
LOC_Os12g06640Os.10232.1.A1_at9/1112+3217992..3221887expressed protein
LOC_Os12g06650Os.10319.1.S1_at11/1112+3225522..3228147pentatricopeptide, putative, expressed
LOC_Os12g06660Os.47560.1.S1_at11/1112+3230531..3233557Actin-7, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11568.1.A1_x_at--942--1451Chr12:3204061..3204085 (25 bp)
AGAATGTTTGGATCTCTGCTTAAAT
LOC_Os12g06610
Os.11568.1.A1_x_at--566--311Chr12:3204100..3204124 (25 bp)
ATACCTTGCTAGTTCCAAGCTTGTG
LOC_Os12g06610
Os.11568.1.A1_x_at--432--8531Chr12:3204159..3204183 (25 bp)
TGGACTGTCTAGTGGAGCTCTATTC
LOC_Os12g06610
Os.11568.1.A1_x_at--475--5911Chr12:3204173..3204197 (25 bp)
GAGCTCTATTCTCTTGATGTTCAGA
LOC_Os12g06610
Os.11568.1.A1_x_at--496--5211Chr12:3204235..3204259 (25 bp)
GAATTCTATTCTCAGGCAGGCTTGT
LOC_Os12g06610
Os.11568.1.A1_x_at--82--271Chr12:3204908..3204932 (25 bp)
ATATGCATCCATTACTTTCTTCAGT
LOC_Os12g06610
Os.11568.1.A1_x_at--584--1331Chr12:3204946..3204970 (25 bp)
AGAGGAGTGGCTCACTTATTCCCAG
LOC_Os12g06610
Os.11568.1.A1_x_at--729--3471Chr12:3204968..3204992 (25 bp)
CAGGCACACGTTACTTACCATTGAG
LOC_Os12g06610
Os.11568.1.A1_x_at--893--9971Chr12:3204983..3205007 (25 bp)
TACCATTGAGACTGAGGCTTGTGCA
LOC_Os12g06610
Os.11568.1.A1_x_at--1071--1231Chr12:3205027..3205051 (25 bp)
AGTTGCAGTCAGATGTTCTTTCCAA
LOC_Os12g06610
Os.11568.1.A1_x_at--571--6731Chr12:3205041..3205065 (25 bp)
GTTCTTTCCAATTCCATCTTTGTTA
LOC_Os12g06610
Target Sequence 
AGAATGTTTGGATCTCTGCTTAAATAAATCTTATAATACATACCTTGCTAGTTCCAAGCTTGTGAATGAAGGAAATATAA
AGCACATTGATTTTTTAATGGACTGTCTAGTGGAGCTCTATTCTCTTGATGTTCAGAAATCATGTGAGAGGGCAACTACC
TCTATAGGACAACTGAATTCTATTCTCAGGCAGGCTTGTAAAACAAAAGAAAAGGAAGACCTCAGGAAGGTAGATAACTG
GCAATATATTAACTGTGTAAACCTATGGGTTAGGTTTCTTTGTTGTAACTACAAGGACTACAATATGCATCCATTACTTT
CTTCAGTTGTTCAAATAATAAGAGGAGTGGCTCACTTATTCCCAGGCACACGTTACTTACCATTGAGACTGAGGCTTGTG
CAGATGCTGAATGAGCTTTCTAGTTGCAGTCAGATGTTCTTTCCAATTCCATCTTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11568.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis