Browse Element(s) Details


Os.10361.1.S1_at

Description gb:AK103122.1
DB_XREF= gi:32988331
TID=Os.10361.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10361 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033119K12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033119K12, full insert sequence.
FL= gb:AK103122.1 gb:AK058274.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0664011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06580NANA12+3191370..3193178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06590NANA12+3194787..3195905retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06600NANA12+3197665..3199653retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06610Os.11568.2.S1_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed
LOC_Os12g06610Os.11568.1.A1_x_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed
LOC_Os12g06620Os.27815.1.S1_at11/1112+3207503..3210748PBS lyase HEAT-like repeat family protein, expressed
LOC_Os12g06630Os.12718.1.S1_at11/1112+3211531..3216695Tubby protein, putative, expressed
LOC_Os12g06630Os.52835.2.S1_at1/1112+3211531..3216695Tubby protein, putative, expressed
LOC_Os12g06640Os.10361.1.S1_at11/1112+3217992..3221887expressed protein
LOC_Os12g06640Os.10232.1.A1_at9/1112+3217992..3221887expressed protein
LOC_Os12g06650Os.10319.1.S1_at11/1112+3225522..3228147pentatricopeptide, putative, expressed
LOC_Os12g06660Os.47560.1.S1_at11/1112+3230531..3233557Actin-7, putative, expressed
LOC_Os12g06670Os.21261.1.A1_at11/1112+3235061..3242464protein kinase family protein, putative, expressed
LOC_Os12g06670OsAffx.5280.1.S1_at5/1112+3235061..3242464protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10361.1.S1_at--405--9711Chr12:3220198..3220222 (25 bp)
TCAACAAAGCATTTCCTGATGGAAC
LOC_Os12g06640
Os.10361.1.S1_at--995--10291Chr12:3220187..3220211 (25 bp)
TTTCCTGATGGAACCAACTTGGCTT
LOC_Os12g06640
Os.10361.1.S1_at--1115--5411Chr12:3220177..3220201 (25 bp)
GAACCAACTTGGCTTTGGCGCAAAA
LOC_Os12g06640
Os.10361.1.S1_at--1128--8451Chr12:3220162..3220186 (25 bp)
TGGCGCAAAAGGATTTGGCTACACA
LOC_Os12g06640
Os.10361.1.S1_at--410--8491Chr12:3220147..3220171 (25 bp)
TGGCTACACAATCTGCAGATCTTGA
LOC_Os12g06640
Os.10361.1.S1_at--1014--3291Chr12:3220141..3220165 (25 bp)
CACAATCTGCAGATCTTGAGGAACA
LOC_Os12g06640
Os.10361.1.S1_at--1127--10731Chr12:3220112..3220136 (25 bp)
TTGCAGATTGAAGTCCAGGCAGTCT
LOC_Os12g06640
Os.10361.1.S1_at--349--10751Chr12:3220105..3220129 (25 bp)
TTGAAGTCCAGGCAGTCTATCTTGC
LOC_Os12g06640
Os.10361.1.S1_at--1095--1531Chr12:3218103..3218127 (25 bp)
AGCTTGCTAACCACACATACTCAGA
LOC_Os12g06640
Os.10361.1.S1_at--263--2651Chr12:3218095..3218119 (25 bp)
AACCACACATACTCAGAAGATCATG
LOC_Os12g06640
Os.10361.1.S1_at--661--7071Chr12:3218052..3218076 (25 bp)
GTCAATTGTCATCATTGTCGACCTA
LOC_Os12g06640
Target Sequence 
TCAACAAAGCATTTCCTGATGGAACCAACTTGGCTTTGGCGCAAAAGGATTTGGCTACACAATCTGCAGATCTTGAGGAA
CANAGGTTGCAGATTGAAGTCCAGGCAGTCTATCTTGCNNAAACAACGGCTCAAATGGGAGCGCTTCAGTAAAAATAAGG
ATAGAGAACTGGAACANATGAGGTTAGAGAATGAAAAAATGAGGCTTGAGAATAAGCGCTTGGAGCTGGAGGTAAGGCAC
AAAGAGTTAGAGCTTGAACTCAAGCAAAAAGGCAGTGGCAATCATGCATGACATATTTTTAACCAATCAAGGCTGACTTG
TAAGATGGTCGCTGATGGCTTCTGTTGTTNGAGTAGACTGACGCAAGAAGGTTAAGGTTNAGCATACTTTTTTTGTTCTG
CTTTTTTTCCCTACATTATTTGTGCTAGTGAGCTTGATTTGTACCATAACTCTTATTCTTCAGTGAGCTTGCTAACCACA
CATACTCAGAAGATCATGTTATATGCTGTTAATGTTGTCAATTGTCATCATTGTCGACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis