Browse Element(s) Details


OsAffx.5280.1.S1_at

Description tigr:9635.m01007
TID=OsAffx.5280.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1040011/11Protein kinase domain containing protein, expressed
LOC_Os12g066705/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10360OsAffx.28385.2.S1_x_at1/117+5557080..5557649hypothetical protein
LOC_Os07g10370OsAffx.28385.2.S1_x_at11/117+5563788..5564315hypothetical protein
LOC_Os07g10380OsAffx.28386.1.S1_at11/117+5564976..5565440hypothetical protein
LOC_Os07g10390Os.18616.1.S1_at11/117+5565871..5574914cleavage and polyadenylation specificity factor, putative, expressed
LOC_Os07g10390OsAffx.12779.1.S1_at1/117+5565871..5574914cleavage and polyadenylation specificity factor, putative, expressed
LOC_Os07g10400OsAffx.5280.1.S1_at11/117+5580700..5585843Protein kinase domain containing protein, expressed
LOC_Os07g10400Os.14644.2.S1_x_at5/117+5580700..5585843Protein kinase domain containing protein, expressed
LOC_Os07g10410OsAffx.5281.1.S1_at11/117+5592210..5593010AP2 domain containing protein
LOC_Os07g10420Os.11633.3.S1_at11/117+5597010..5599089expressed protein
LOC_Os07g10420OsAffx.28387.1.S1_s_at11/117+5597010..5599089expressed protein
LOC_Os07g10430OsAffx.5282.1.S1_at11/117+5607013..5607330hypothetical protein
LOC_Os07g10440OsAffx.5283.1.S1_at5/117+5610538..5610913expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5280.1.S1_at--678--5231Chr07:5583572..5583596 (25 bp)
GAATACATGTCTGGAGGAAGCCTAT
LOC_Os07g10400
OsAffx.5280.1.S1_at--133--5431Chr07:5583588..5583612 (25 bp)
GAAGCCTATATGACTTTTTGCACAA
LOC_Os07g10400
OsAffx.5280.1.S1_at--18--1532Chr07:5583615..5583639 (25 bp)
AGCATAATGTCTTGGACCTTCCAAC
LOC_Os07g10400
OsAffx.5280.1.S1_at--619--8092Chr07:5583628..5583652 (25 bp)
GGACCTTCCAACTCTGCTGAAGTTT
LOC_Os07g10400
OsAffx.5280.1.S1_at--1059--771Chr07:5583674..5583698 (25 bp)
ATGTGTTACTTGCATCAGATGGGTA
LOC_Os07g10400
OsAffx.5280.1.S1_at--582--6112Chr07:5583718..5583742 (25 bp)
GAGTGCAAACCTTCTAATGGACAAA
LOC_Os07g10400
OsAffx.5280.1.S1_at--486--1352Chr07:5584051..5584075 (25 bp)
AGAGATACAACTCTGTTGCTGGAGC
LOC_Os07g10400
OsAffx.5280.1.S1_at--958--1272Chr07:5584915..5584939 (25 bp)
AGATCCCTTATAATACCATGACCCC
LOC_Os07g10400
OsAffx.5280.1.S1_at--1094--1551Chr07:5585020..5585040 (21 bp)
AGCTTTGTACCATAATACGCACATT
LOC_Os07g10400
OsAffx.5280.1.S1_at--913--9871Chr07:5585066..5585090 (25 bp)
TACAGGTATACAAGGGATTGCGCCC
LOC_Os07g10400
OsAffx.5280.1.S1_at--923--5511Chr07:5585101..5585125 (25 bp)
GAAAATGCACATTCCCAGCTATTAC
LOC_Os07g10400
Target Sequence 
GAATACATGTCTGGAGGAAGCCTATATGACTTTTTGCACAAGCAGCATAATGTCTTGGACCTTCCAACTCTGCTGAAGTT
TGCAGTTGATCTATGCAGAGGGATGTGTTACTTGCATCAGATGGGTATTATCCATAGAGATTTAAAGAGTGCAAACCTTC
TAATGGACAAAGATCATGTTGTGAAAGTGGCAGATTTTGGTGTAGCTCATTTTCAGGATCAAGGAGGTAACATGACAGCT
GAAACTGGAACATACAGATGGATGGCACCAGAGATACAACTCTGTTGCTGGAGCAAAGTCATAAATCATCAACCCTACGA
TAACAAAGCTGATGTGTTCAGTTTTGCTATTGTGCTTTGGGAGCTCATAACGTCCAAGATCCCTTATAATACCATGACCC
CTCTCCAAGCAGCTTTGTACCATAATACGCACATTGTGAAATGCACTAAGCATGACATTTTACAGGTATACAAGGGATTG
CGCCCAGGGCTCCCAGAAAATGCACATTCCCAGCTATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5280.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis