Browse Element(s) Details


Os.14644.2.S1_x_at

Description gb:NM_189459.1
DB_XREF= gi:34906001
GEN=P0518C01.12
TID=Os.14644.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14644 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0518C01.12 (P0518C01.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0518C01.12 (P0518C01.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g104005/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10360OsAffx.28385.2.S1_x_at1/117+5557080..5557649hypothetical protein
LOC_Os07g10370OsAffx.28385.2.S1_x_at11/117+5563788..5564315hypothetical protein
LOC_Os07g10380OsAffx.28386.1.S1_at11/117+5564976..5565440hypothetical protein
LOC_Os07g10390Os.18616.1.S1_at11/117+5565871..5574914cleavage and polyadenylation specificity factor, putative, expressed
LOC_Os07g10390OsAffx.12779.1.S1_at1/117+5565871..5574914cleavage and polyadenylation specificity factor, putative, expressed
LOC_Os07g10400OsAffx.5280.1.S1_at11/117+5580700..5585843Protein kinase domain containing protein, expressed
LOC_Os07g10400Os.14644.2.S1_x_at5/117+5580700..5585843Protein kinase domain containing protein, expressed
LOC_Os07g10410OsAffx.5281.1.S1_at11/117+5592210..5593010AP2 domain containing protein
LOC_Os07g10420Os.11633.3.S1_at11/117+5597010..5599089expressed protein
LOC_Os07g10420OsAffx.28387.1.S1_s_at11/117+5597010..5599089expressed protein
LOC_Os07g10430OsAffx.5282.1.S1_at11/117+5607013..5607330hypothetical protein
LOC_Os07g10440OsAffx.5283.1.S1_at5/117+5610538..5610913expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14644.2.S1_x_at--1084--5371Chr01:43195586..43195610 (25 bp)
GAAGCACCCAATTTGGTTTCTTGGA
NONE
Os.14644.2.S1_x_at--799--7191Chr01:43195551..43195575 (25 bp)
GTCGGGATGTGCTCAACATGGCCAT
NONE
Os.14644.2.S1_x_at--1068--1371Chr01:43195473..43195497 (25 bp)
AGACCACATAACCTTCTTGTCAGTC
NONE
Os.14644.2.S1_x_at--698--2872Chr07:5582006..5582030 (25 bp)
AAGGGCTCGAGTATTTCAACTTGAT
LOC_Os07g10400
Os.14644.2.S1_x_at--232--10793Chr07:5582084..5582108 (25 bp)
TTGATCTTCTTGGTCGAGCAGGCTA
LOC_Os07g10400
Os.14644.2.S1_x_at--756--10172Chr07:5582165..5582189 (25 bp)
TATACAGAGCTCTGCTCAGTGCCTG
LOC_Os07g10400
Os.14644.2.S1_x_at--448--7292Chr07:5582183..5582207 (25 bp)
GTGCCTGCCAGATTCATGGGAACCT
LOC_Os07g10400
Os.14644.2.S1_x_at--320--6591Chr01:43195209..43195233 (25 bp)
GATTGCAATCCGAGTGTCCAAGCGT
NONE
Os.14644.2.S1_x_at--341--3031Chr01:43195203..43195227 (25 bp)
AATCCGAGTGTCCAAGCGTCTAATG
NONE
Os.14644.2.S1_x_at--1071--8072Chr07:5582242..5582265 (24 bp)
GGAGCTAAATCCTCATGACTCATCT
LOC_Os07g10400
Os.14644.2.S1_x_at--205--8051NONE
GGAGACCATGTCAGGGCCTTTGCAG
NONE
Target Sequence 
GAAGCACCCAATTTGGTTTCTTGGAATTCACTAATGTCGGGATGTGCTCAACATGGCCATGGAAAGGAGGTAGTTGAGAT
GTTTGAACAAATGAGGAGGCTACATGTTCAGCCAGACCACATAACCTTCTTGTCAGTCCTCACAGCTTGCAGCCATGTTG
GCTTGGTAGATAAAGGGCTCGAGTATTTCAACTTGATGAAAGATAAAGGGTATCTTGTGGGAGCAAGGACAAAACACTAT
GCTTGTATGGTTGATCTTCTTGGTCGAGCAGGCTATCTCAATGAAGCTGAATACTTGATTAATGGCATGCCTATAAAACC
TGGTGCATCAGTATACAGAGCTCTGCTCAGTGCCTGCCAGATTCATGGGAACCTTGAGATTGCAATCCGAGTGTCCAAGC
GTCTAATGGAGCTAAATCCTCATGACTCATCTGTTCATGTTCAGTTATCAAATGCCTTTGCTGGTGATGGCCGTTGGGGT
AATGCTGCTGAGATCAGGGAGACCATGTCAGGGCCTTTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14644.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis