Browse Element(s) Details


Os.10232.1.A1_at

Description gb:AU081293
DB_XREF= gi:6431641
DB_XREF=AU081293
CLONE=E10042_6Z
TID=Os.10232.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10232 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g066409/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06580NANA12+3191370..3193178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06590NANA12+3194787..3195905retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06600NANA12+3197665..3199653retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06610Os.11568.2.S1_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed
LOC_Os12g06610Os.11568.1.A1_x_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed
LOC_Os12g06620Os.27815.1.S1_at11/1112+3207503..3210748PBS lyase HEAT-like repeat family protein, expressed
LOC_Os12g06630Os.12718.1.S1_at11/1112+3211531..3216695Tubby protein, putative, expressed
LOC_Os12g06630Os.52835.2.S1_at1/1112+3211531..3216695Tubby protein, putative, expressed
LOC_Os12g06640Os.10361.1.S1_at11/1112+3217992..3221887expressed protein
LOC_Os12g06640Os.10232.1.A1_at9/1112+3217992..3221887expressed protein
LOC_Os12g06650Os.10319.1.S1_at11/1112+3225522..3228147pentatricopeptide, putative, expressed
LOC_Os12g06660Os.47560.1.S1_at11/1112+3230531..3233557Actin-7, putative, expressed
LOC_Os12g06670Os.21261.1.A1_at11/1112+3235061..3242464protein kinase family protein, putative, expressed
LOC_Os12g06670OsAffx.5280.1.S1_at5/1112+3235061..3242464protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10232.1.A1_at--210--7891NONE
GGTTCAGATGAAGTCCAGGCAGTTT
NONE
Os.10232.1.A1_at--908--6812Chr08:11127534..11127570 (24 bp)
GTTTATTTGCAAACAACGGCTCAAA
NONE
Os.10232.1.A1_at--700--6971Chr12:3219880..3219904 (25 bp)
GTAAGATGGTAAGCCAACTCCCCAG
LOC_Os12g06640
Os.10232.1.A1_at--666--9291Chr12:3219862..3219886 (25 bp)
TCCCCAGCATCATTACCCTTAAAAA
LOC_Os12g06640
Os.10232.1.A1_at--646--9531Chr12:3219828..3219852 (25 bp)
TCATTTTGAGGAACCCTTTTTGCCT
LOC_Os12g06640
Os.10232.1.A1_at--261--3231Chr12:3219801..3219825 (25 bp)
CAAGTTTTTGGTATTACTGTGCAGA
LOC_Os12g06640
Os.10232.1.A1_at--845--9031Chr12:3219782..3219806 (25 bp)
TGCAGAAAGGCGCTAGTACCATCTT
LOC_Os12g06640
Os.10232.1.A1_at--1059--6971Chr12:3219767..3219791 (25 bp)
GTACCATCTTAGCACTGTATTTCAT
LOC_Os12g06640
Os.10232.1.A1_at--888--6871Chr12:3219751..3219775 (25 bp)
GTATTTCATCTTTACAGCTTAATGT
LOC_Os12g06640
Os.10232.1.A1_at--1117--7631Chr12:3219696..3219720 (25 bp)
GGGAGCCATGAATTCTTGAGATACT
LOC_Os12g06640
Os.10232.1.A1_at--965--2811Chr12:3219653..3219677 (25 bp)
AAGTTGCCTGTATCATCAATTAATG
LOC_Os12g06640
Target Sequence 
GGTTCAGATGAAGTCCAGGCAGTTTATTTGCAAACAACGGCTCAAATGGAGCGCTTCAGTAAAATTAGGATAGAGAACTG
GAACAGATGAGGTTAGAGAATGAAAAAATGAGGCTTGAGAATAAGCGCTTGGAGCTGGAGGTAAGGCACAAAGAGTTAGA
NCTTGAACTCAAGCAAAAAGGNAGTGGCAATCATGCATGACATATTTTTAACCAATNCAAGGCTGACTTGTAAGATGGTA
AGCCAACTCCCCAGCATCATTACCCTTAAAAACCTAAATTTTCATTTTGAGGAACCCTTTTTGCCTATCAAGTTTTTGGT
ATTACTGTGCAGAAAGGCGCTAGTACCATCTTAGCACTGTATTTCATCTTTACAGCTTAATGTTCTNTATGTGATAACAT
CAATAAATATTTTGGGAGCCATGAATTCTTGAGATACTTGAGCTAAAAAAGAATATAAGTTGCCTGTATCATCAATTAAT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10232.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis