Browse Element(s) Details


Os.37860.1.S1_at

Description gb:AK063683.1
DB_XREF= gi:32973701
TID=Os.37860.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-E10, full insert sequence.
FL= gb:AK063683.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0233011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02300Os.28385.1.S1_x_at11/1111+654101..660239mitogen-activated protein kinase, putative, expressed
LOC_Os11g02300Os.28385.2.S1_a_at11/1111+654101..660239mitogen-activated protein kinase, putative, expressed
LOC_Os11g02300Os.28385.3.S1_x_at2/1111+654101..660239mitogen-activated protein kinase, putative, expressed
LOC_Os11g02300OsAffx.25784.1.S1_x_at2/1111+654101..660239mitogen-activated protein kinase, putative, expressed
LOC_Os11g02320Os.21252.1.S1_at11/1111+662978..670704nucleotidyltransferase family protein, putative, expressed
LOC_Os11g02310OsAffx.23315.1.S1_s_at2/1111+670598..672211pentatricopeptide, putative
LOC_Os11g02330Os.37860.1.S1_at11/1111+679037..679892expressed protein
LOC_Os11g02330Os.57455.1.S1_x_at6/1111+679037..679892expressed protein
LOC_Os11g02340OsAffx.29227.2.S1_at10/1111+681453..683177hypothetical protein
LOC_Os11g02340OsAffx.29227.1.S1_s_at1/1111+681453..683177hypothetical protein
LOC_Os11g02350Os.4380.1.S1_at11/1111+683780..684610Nonspecific lipid-transfer protein 4 precursor, putative, expressed
LOC_Os11g02360OsAffx.6966.1.S1_at11/1111+685087..686482hypothetical protein
LOC_Os11g02379Os.10615.1.S1_s_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.10255.1.S1_s_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.27520.1.S1_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.38269.1.S1_x_at10/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.27520.2.S1_x_at9/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.10615.1.S1_x_at3/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.51910.1.S1_x_at1/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37860.1.S1_at--1083--9211Chr11:679651..679675 (25 bp)
TCCAGCTCTCATTTCGCGGTTGCTA
LOC_Os11g02330
Os.37860.1.S1_at--123--3591Chr11:679660..679684 (25 bp)
CATTTCGCGGTTGCTATGTGCATGC
LOC_Os11g02330
Os.37860.1.S1_at--193--9091Chr11:679671..679695 (25 bp)
TGCTATGTGCATGCGCCGTCGTCAA
LOC_Os11g02330
Os.37860.1.S1_at--132--9171Chr11:679682..679706 (25 bp)
TGCGCCGTCGTCAATGATCGAGCTA
LOC_Os11g02330
Os.37860.1.S1_at--745--10191Chr11:679711..679735 (25 bp)
TATATATGCATGTTGCTCCTTCGTT
LOC_Os11g02330
Os.37860.1.S1_at--915--6671Chr11:679722..679746 (25 bp)
GTTGCTCCTTCGTTGTGTTACTTCC
LOC_Os11g02330
Os.37860.1.S1_at--419--6631Chr11:679733..679757 (25 bp)
GTTGTGTTACTTCCTGCTTACCTGC
LOC_Os11g02330
Os.37860.1.S1_at--871--9071Chr11:679747..679771 (25 bp)
TGCTTACCTGCTGCGGTTTGATAGT
LOC_Os11g02330
Os.37860.1.S1_at--385--5791Chr11:679811..679835 (25 bp)
GACGAATCATGAATCTCAGAGGACC
LOC_Os11g02330
Os.37860.1.S1_at--418--451Chr11:679823..679847 (25 bp)
ATCTCAGAGGACCTTGTACCACTGC
LOC_Os11g02330
Os.37860.1.S1_at--838--8751Chr11:679837..679861 (25 bp)
TGTACCACTGCACGCTTCAATATAT
LOC_Os11g02330
Target Sequence 
TCCAGCTCTCATTTCGCGGTTGCTATGTGCATGCGCCGTCGTCAATGATCGAGCTAGAAATATATATGCATGTTGCTCCT
TCGTTGTGTTACTTCCTGCTTACCTGCTGCGGTTTGATAGTTAGCTAGTGTGAGAGACTGTGAGGGTTGATTTTGGGGCA
GACGAATCATGAATCTCAGAGGACCTTGTACCACTGCACGCTTCAATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis