Browse Element(s) Details


OsAffx.29227.1.S1_s_at

Description tigr:9636.m01598
TID=OsAffx.29227.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1592011/11hypothetical protein
LOC_Os11g023401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15880OsAffx.5831.1.S1_at11/118+9659514..9665037NB-ARC domain containing protein
LOC_Os08g15880OsAffx.29724.6.S1_x_at1/118+9659514..9665037NB-ARC domain containing protein
LOC_Os08g15890OsAffx.29226.1.S1_at11/118+9669992..9670865hypothetical protein
LOC_Os08g15900OsAffx.22682.2.S1_at11/118+9680143..9683670transposase related protein, putative
LOC_Os08g15900OsAffx.22682.1.S1_at1/118+9680143..9683670transposase related protein, putative
LOC_Os08g15900OsAffx.15500.1.S1_x_at1/118+9680143..9683670transposase related protein, putative
LOC_Os08g15900OsAffx.13264.1.S1_x_at1/118+9680143..9683670transposase related protein, putative
LOC_Os08g15910OsAffx.17017.1.S1_at11/118+9684823..9686198hypothetical protein
LOC_Os08g15920OsAffx.29227.1.S1_s_at11/118+9688891..9690586hypothetical protein
LOC_Os08g15920Os.38764.1.S1_x_at4/118+9688891..9690586hypothetical protein
LOC_Os08g15930OsAffx.5832.1.S1_at11/118+9697179..9697796hypothetical protein
LOC_Os08g15940NANA8+9698456..9699876transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g15950OsAffx.5833.1.S1_at10/118+9700957..9701941hypothetical protein
LOC_Os08g15960NANA8+9704610..9704942hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29227.1.S1_s_at--409--6571Chr08:9689702..9689726 (25 bp)
GATTCTCTACAAGCATCGATCTCCA
LOC_Os08g15920
OsAffx.29227.1.S1_s_at--1019--2211Chr08:9689710..9689730 (21 bp)
ACAAGCATCGATCTCCATAAGGTGG
LOC_Os08g15920
OsAffx.29227.1.S1_s_at--118--7951Chr08:9689919..9689943 (25 bp)
GGATAACGCAATGCACAATAGGCAA
LOC_Os08g15920
OsAffx.29227.1.S1_s_at--1104--3091Chr08:9689935..9689959 (25 bp)
AATAGGCAAGAGTTCAACGCATACT
LOC_Os08g15920
OsAffx.29227.1.S1_s_at--239--6071Chr08:9689944..9689968 (25 bp)
GAGTTCAACGCATACTTAGCCTGGC
LOC_Os08g15920
OsAffx.29227.1.S1_s_at--947--2032Chr08:9689957..9689981 (25 bp)
ACTTAGCCTGGCTCGCGAGGAACTA
LOC_Os08g15920
OsAffx.29227.1.S1_s_at--262--4871Chr08:9690192..9690216 (25 bp)
GCTAGTCAGGGCAGTGAATGATTTG
LOC_Os08g15920
OsAffx.29227.1.S1_s_at--932--5931Chr08:9690255..9690279 (25 bp)
GAGCAGTGTTCTTCAGAATGCCTTA
LOC_Os08g15920
OsAffx.29227.1.S1_s_at--1156--5251Chr08:9690270..9690361 (25 bp)
GAATGCCTTACAGACTCTACGACAG
LOC_Os08g15920
OsAffx.29227.1.S1_s_at--884--9852Chr08:9690348..9690369 (22 bp)
TACAGACTCTACGACAGCGTTGCAA
LOC_Os08g15920
OsAffx.29227.1.S1_s_at--370--3391Chr08:9690359..9690383 (25 bp)
CAGCGTTGCAAGAAGTTGGCGGCAC
LOC_Os08g15920
Target Sequence 
GATTCTCTACAAGCATCGATCTCCATAAGGTGGACAGAAGGAAAAACAAGAAGACCACCGATTGGACTGCTTATCATCAG
ACACACATCGATCGATGGGACCAGTTCAAAGCCAACCGCATGCCGGATAACGCAATGCACAATAGGCAAGAGTTCAACGC
ATACTTAGCCTGGCTCGCGAGGAACTACCGCCTCGCCCTACGTCCGGCTTGGACGCTAGCCGACATAGCGGACAACCTGA
CTGAGGCACAAGAGCTAGTCAGGGCAGTGAATGATTTGGGCGTGGCACTTGGCACGCCCCCTAGCTCGCAACAAGAGAGC
AGTGTTCTTCAGAATGCCTTACAGACTCTACGACAGCGTTGCAAGAAGTTGGCGGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29227.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis