Browse Element(s) Details


OsAffx.13264.1.S1_x_at

Description tigr:9631.m03890
TID=OsAffx.13264.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4043011/11hypothetical protein
LOC_Os06g349104/11transposon protein, putative, Mutator sub-class
LOC_Os08g159001/11transposase related protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40370Os.12987.1.S1_at2/113+22389484..22392294F-box domain containing protein
LOC_Os03g40380OsAffx.3598.1.S1_x_at2/113+22395769..22396161expressed protein
LOC_Os03g40390Os.54052.1.S1_at11/113+22397941..22399643expressed protein
LOC_Os03g40400OsAffx.13263.1.S1_at11/113+22400439..22402342Protein kinase domain containing protein
LOC_Os03g40410Os.12987.1.S1_at11/113+22406162..22408570expressed protein
LOC_Os03g40430OsAffx.13264.1.S1_x_at11/113+22416916..22417542hypothetical protein
LOC_Os03g40430OsAffx.13264.1.S1_at11/113+22416916..22417542hypothetical protein
LOC_Os03g40440Os.16295.1.S1_at10/113+22418386..22419453expressed protein
LOC_Os03g40450Os.16091.1.S1_at5/113+22423845..22424454expressed protein
LOC_Os03g40460NANA3+22429152..22432739hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13264.1.S1_x_at--349--10031Chr03:22417463..22417487 (25 bp)
TAGATATAGTCTTGGGTTTACAGTT
LOC_Os03g40430
OsAffx.13264.1.S1_x_at--548--6753Chr08:9681698..9681722 (25 bp)
GTTCAAATCGCTTGAGGTGTTTGCT
LOC_Os08g15900
OsAffx.13264.1.S1_x_at--65--5771Chr03:22417393..22417417 (25 bp)
GACGAAAGAATTTTTAGACCTCAAT
LOC_Os03g40430
OsAffx.13264.1.S1_x_at--322--10032Chr06:20301399..20301418 (20 bp)
TAGACCTCAATGAAAGTCCGCACAT
LOC_Os06g34910
OsAffx.13264.1.S1_x_at--304--672Chr06:20301403..20301426 (24 bp)
ATGAAAGTCCGCACATAGAATCCCC
LOC_Os06g34910
OsAffx.13264.1.S1_x_at--61--3571Chr03:22417254..22417278 (25 bp)
CATAAAGATGTGTTCGTGGTGGATT
LOC_Os03g40430
OsAffx.13264.1.S1_x_at--52--3451Chr03:22417064..22417088 (25 bp)
CAGTTGAACTTGACGAGAGGCGGTT
LOC_Os03g40430
OsAffx.13264.1.S1_x_at--622--6211Chr03:22417048..22417072 (25 bp)
GAGGCGGTTGATTTTATTCATCAGA
LOC_Os03g40430
OsAffx.13264.1.S1_x_at--144--9651Chr03:22417028..22417052 (25 bp)
TCAGAGACTTGCTTGATGAAGAAAT
LOC_Os03g40430
OsAffx.13264.1.S1_x_at--816--652Chr06:20301692..20301711 (20 bp)
ATGAAGAAATTTACACTCGCGAGGA
LOC_Os06g34910
OsAffx.13264.1.S1_x_at--151--2551Chr03:22416957..22416981 (25 bp)
AACTCGAATTTGTTGTATGCTGATT
LOC_Os03g40430
Target Sequence 
TAGATATAGTCTTGGGTTTACAGTTCAAATCGCTTGAGGTGTTTGCTTGGAAGAAAGAGCGTAGGGAATCGACGAAAGAA
TTTTTAGACCTCAATGAAAGTCCGCACATAGAATCCCCCATGTATTGTCATGAATTAAAGAATGATGTGTTTGTGGTGAA
TCGGAAGGAAGAATTAATTGAGAAAGATGTGGAGGTAGGGGACGAAATACATAAAGATGTGTTCGTGGTGGATTGGAAGG
AAGAATTAATTGAGGGAGATGTGCAGGTAGGGGATGAAAAACAAGTTGAGGAGGATGTGGATATAGGTGAGGAGAGGCAC
CGGGATGTGGAGGATGGGGAGGTAGAGCAGGAAATGTCAGATGATGGTATGGATGTGAATCAATCAGATAATGAGAATAC
AGTTGAACTTGACGAGAGGCGGTTGATTTTATTCATCAGAGACTTGCTTGATGAAGAAATTTACACTCGCGAGGAGTGTG
AGGAAAACATGATATTTAATGGATTAAACTCGAATTTGTTGTATGCTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13264.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis