Browse Element(s) Details


Os.54052.1.S1_at

Description gb:AK101571.1
DB_XREF= gi:32986780
TID=Os.54052.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54052 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050I23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050I23, full insert sequence.
FL= gb:AK101571.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4039011/11expressed protein
LOC_Os01g456501/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40310Os.37314.1.S1_at4/113+22368427..22373259Peptidyl-prolyl cis-trans isomerase E, putative, expressed
LOC_Os03g40320NANA3+22377728..22378347hypothetical protein
LOC_Os03g40330OsAffx.25450.1.S1_at11/113+22378634..22379450Glycosyl hydrolases family 17 protein
LOC_Os03g40360OsAffx.31892.5.S1_x_at11/113+22384847..22386490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40360OsAffx.31892.5.S1_at10/113+22384847..22386490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40360OsAffx.31892.1.S1_x_at2/113+22384847..22386490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40360OsAffx.31892.3.S1_at1/113+22384847..22386490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40370Os.12987.1.S1_at2/113+22389484..22392294F-box domain containing protein
LOC_Os03g40380OsAffx.3598.1.S1_x_at2/113+22395769..22396161expressed protein
LOC_Os03g40390Os.54052.1.S1_at11/113+22397941..22399643expressed protein
LOC_Os03g40400OsAffx.13263.1.S1_at11/113+22400439..22402342Protein kinase domain containing protein
LOC_Os03g40410Os.12987.1.S1_at11/113+22406162..22408570expressed protein
LOC_Os03g40430OsAffx.13264.1.S1_x_at11/113+22416916..22417542hypothetical protein
LOC_Os03g40430OsAffx.13264.1.S1_at11/113+22416916..22417542hypothetical protein
LOC_Os03g40440Os.16295.1.S1_at10/113+22418386..22419453expressed protein
LOC_Os03g40450Os.16091.1.S1_at5/113+22423845..22424454expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54052.1.S1_at--1147--3591Chr03:22399345..22399369 (25 bp)
CATTGCCACCACCAATTGTCTTTGA
LOC_Os03g40390
Os.54052.1.S1_at--198--8691Chr03:22399361..22399385 (25 bp)
TGTCTTTGAGACTGTGGCCTGGATT
LOC_Os03g40390
Os.54052.1.S1_at--962--8452Chr03:22399375..22399399 (25 bp)
TGGCCTGGATTTTCTCGTGCGGTTC
LOC_Os03g40390
Os.54052.1.S1_at--223--7311Chr03:22399391..22399415 (25 bp)
GTGCGGTTCTTGTTTTACACTGTTA
LOC_Os03g40390
Os.54052.1.S1_at--308--6951Chr03:22399451..22399475 (25 bp)
GTAGAAGTTTCTGCCGTTAATATAT
LOC_Os03g40390
Os.54052.1.S1_at--176--11Chr03:22399488..22399512 (25 bp)
AGCAAAGGGACCAGGCAGTTAGAAA
LOC_Os03g40390
Os.54052.1.S1_at--906--6831Chr03:22399528..22399552 (25 bp)
GTTTCTTGTCTGAGAAGATACTGCA
LOC_Os03g40390
Os.54052.1.S1_at--143--6491Chr03:22399544..22399568 (25 bp)
GATACTGCAATACATGTAGGTGTGT
LOC_Os03g40390
Os.54052.1.S1_at--759--6051Chr03:22399573..22399597 (25 bp)
GAGTTGGATGTAGGTCTTTCTTCTT
LOC_Os03g40390
Os.54052.1.S1_at--1092--10071Chr03:22399583..22399607 (25 bp)
TAGGTCTTTCTTCTTTGGGTGCTTT
LOC_Os03g40390
Os.54052.1.S1_at--28--2091Chr03:22399620..22399643 (24 bp)
AAAGGACTTAAGAGTTTTCATCTGC
LOC_Os03g40390
Target Sequence 
CATTGCCACCACCAATTGTCTTTGAGACTGTGGCCTGGATTTTCTCGTGCGGTTCTTGTTTTACACTGTTAAGTTTACCC
CCTATAAGTTTTTCTTAAGGAAAGCTGTAGAAGTTTCTGCCGTTAATATATTAGGAAGAAGATAGCAAAGGGACCAGGCA
GTTAGAAAAACAATTAAGTTCTTGTTTCTTGTCTGAGAAGATACTGCAATACATGTAGGTGTGTGTAGGAGTTGGATGTA
GGTCTTTCTTCTTTGGGTGCTTTTGCTTTGAGGTGAAAGGACTTAAGAGTTTTCATCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis