Browse Element(s) Details


OsAffx.25450.1.S1_at

Description tigr:9631.m03880
TID=OsAffx.25450.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative beta-1,3-glucanase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4033011/11Glycosyl hydrolases family 17 protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40290OsAffx.10447.1.S1_at11/113+22354481..22355203hypothetical protein
LOC_Os03g40300OsAffx.13262.1.S1_at11/113+22357044..22357773hypothetical protein
LOC_Os03g40310Os.37314.1.S1_at4/113+22368427..22373259Peptidyl-prolyl cis-trans isomerase E, putative, expressed
LOC_Os03g40320NANA3+22377728..22378347hypothetical protein
LOC_Os03g40330OsAffx.25450.1.S1_at11/113+22378634..22379450Glycosyl hydrolases family 17 protein
LOC_Os03g40360OsAffx.31892.5.S1_x_at11/113+22384847..22386490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40360OsAffx.31892.5.S1_at10/113+22384847..22386490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40360OsAffx.31892.1.S1_x_at2/113+22384847..22386490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40360OsAffx.31892.3.S1_at1/113+22384847..22386490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40370Os.12987.1.S1_at2/113+22389484..22392294F-box domain containing protein
LOC_Os03g40380OsAffx.3598.1.S1_x_at2/113+22395769..22396161expressed protein
LOC_Os03g40390Os.54052.1.S1_at11/113+22397941..22399643expressed protein
LOC_Os03g40400OsAffx.13263.1.S1_at11/113+22400439..22402342Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25450.1.S1_at--714--671Chr03:22379180..22379204 (25 bp)
ATGAACAACATCAGAGACGCGCTCT
LOC_Os03g40330
OsAffx.25450.1.S1_at--1000--4391Chr03:22378977..22379161 (25 bp)
GCCACATCAAGAACGACAACGGCGT
LOC_Os03g40330
OsAffx.25450.1.S1_at--367--6311Chr03:22378909..22378933 (25 bp)
GATGACAACGGACACACCTACACCA
LOC_Os03g40330
OsAffx.25450.1.S1_at--346--2631Chr03:22378885..22378909 (25 bp)
AACCTCTTCGATGCCATGGTTGACA
LOC_Os03g40330
OsAffx.25450.1.S1_at--205--831Chr03:22378870..22378894 (25 bp)
ATGGTTGACAGCATATACTCGGCAA
LOC_Os03g40330
OsAffx.25450.1.S1_at--1161--6111Chr03:22378833..22378857 (25 bp)
GAGGGTCAGATGTGCCCGTCGTCAT
LOC_Os03g40330
OsAffx.25450.1.S1_at--320--4231Chr03:22378818..22378842 (25 bp)
CCGTCGTCATTTCCGAGACCGGGTG
LOC_Os03g40330
OsAffx.25450.1.S1_at--923--5611Chr03:22378762..22378786 (25 bp)
GACAACGCCAGGGTGTACAACCAGA
LOC_Os03g40330
OsAffx.25450.1.S1_at--995--3411Chr03:22378741..22378765 (25 bp)
CAGAACTTGATCAACCATGTCGGAA
LOC_Os03g40330
OsAffx.25450.1.S1_at--175--1731Chr03:22378728..22378752 (25 bp)
ACCATGTCGGAAAGGGCACGCCCAA
LOC_Os03g40330
OsAffx.25450.1.S1_at--701--891Chr03:22378702..22378726 (25 bp)
AGGCCCGTGGCATTGGAGACTTACA
LOC_Os03g40330
Target Sequence 
ATGAACAACATCAGAGACGCGCTCTCCGCGGCCGGCCTCGGCGGCCACATCAAGAACGACAACGGCGTCGACCTCAACTT
CGCGCTCTTCCGGCCAAGCTCGACGACGATAGATGACAACGGACACACCTACACCAACCTCTTCGATGCCATGGTTGACA
GCATATACTCGGCAATGGAGAAGGAGGGAGGGTCAGATGTGCCCGTCGTCATTTCCGAGACCGGGTGGCCATCGGCTGAC
GGTCGTGGCGCGAGCAAGGACAACGCCAGGGTGTACAACCAGAACTTGATCAACCATGTCGGAAAGGGCACGCCCAAGAG
GCCCGTGGCATTGGAGACTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis