Browse Element(s) Details


OsAffx.13263.1.S1_at

Description tigr:9631.m03887
TID=OsAffx.13263.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative initiation factor 2 alpha kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4040011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40320NANA3+22377728..22378347hypothetical protein
LOC_Os03g40330OsAffx.25450.1.S1_at11/113+22378634..22379450Glycosyl hydrolases family 17 protein
LOC_Os03g40360OsAffx.31892.5.S1_x_at11/113+22384847..22386490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40360OsAffx.31892.5.S1_at10/113+22384847..22386490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40360OsAffx.31892.1.S1_x_at2/113+22384847..22386490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40360OsAffx.31892.3.S1_at1/113+22384847..22386490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40370Os.12987.1.S1_at2/113+22389484..22392294F-box domain containing protein
LOC_Os03g40380OsAffx.3598.1.S1_x_at2/113+22395769..22396161expressed protein
LOC_Os03g40390Os.54052.1.S1_at11/113+22397941..22399643expressed protein
LOC_Os03g40400OsAffx.13263.1.S1_at11/113+22400439..22402342Protein kinase domain containing protein
LOC_Os03g40410Os.12987.1.S1_at11/113+22406162..22408570expressed protein
LOC_Os03g40430OsAffx.13264.1.S1_x_at11/113+22416916..22417542hypothetical protein
LOC_Os03g40430OsAffx.13264.1.S1_at11/113+22416916..22417542hypothetical protein
LOC_Os03g40440Os.16295.1.S1_at10/113+22418386..22419453expressed protein
LOC_Os03g40450Os.16091.1.S1_at5/113+22423845..22424454expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000079biological_processregulation of cyclin dependent protein kinase activity
GO:0006468biological_processprotein amino acid phosphorylation
GO:0030154biological_processcell differentiation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13263.1.S1_at--448--231Chr03:22401245..22401269 (25 bp)
ATATTCATATGGAGGCCTGTGCCAG
LOC_Os03g40400
OsAffx.13263.1.S1_at--888--7271Chr03:22401637..22401657 (21 bp)
GTGCCAGGACCCTTTATGATTTTCT
LOC_Os03g40400
OsAffx.13263.1.S1_at--976--1291Chr03:22401725..22401749 (25 bp)
AGATGCATCCATGCTACTGGGATAA
LOC_Os03g40400
OsAffx.13263.1.S1_at--1150--4231Chr03:22401754..22401778 (25 bp)
CCGTGACCTCAAGCCATGGAATATT
LOC_Os03g40400
OsAffx.13263.1.S1_at--1127--6671Chr03:22401825..22401849 (25 bp)
GTTGCTGGTCTAAATCTTACTGTGA
LOC_Os03g40400
OsAffx.13263.1.S1_at--1098--811Chr03:22401849..22401873 (25 bp)
ATGGTCGACGTGGTTCACCTGATTG
LOC_Os03g40400
OsAffx.13263.1.S1_at--449--1731Chr03:22401878..22401902 (25 bp)
ACCATGTTGTATTCGGCACCAGAGC
LOC_Os03g40400
OsAffx.13263.1.S1_at--962--10151Chr03:22402046..22402070 (25 bp)
TATCTTGAGATCTTCATGCCTGCTG
LOC_Os03g40400
OsAffx.13263.1.S1_at--694--3531Chr03:22402060..22402084 (25 bp)
CATGCCTGCTGCTGTTAGTGTTAAC
LOC_Os03g40400
OsAffx.13263.1.S1_at--1122--8071Chr03:22402171..22402195 (25 bp)
GGACCTAACTGCTTTAAACCCATGT
LOC_Os03g40400
OsAffx.13263.1.S1_at--290--3511Chr03:22402191..22402215 (25 bp)
CATGTGACCGTCCATCTGTGGGTAC
LOC_Os03g40400
Target Sequence 
ATATTCATATGGAGGCCTGTGCCAGGACCCTTTATGATTTTCTGTGTGGAAATAATGAAGGAACAATTCAGGACAGGTGG
TCTCTTTTTGAGAGAATCGTAAAAGGTGTAAGATGCATCCATGCTACTGGGATAATCCACCGTGACCTCAAGCCATGGAA
TATTTTCCTTGGACCTTGTGGCGCTGTTAGAATTGGTGATTTAGGACATGGTTGCTGGTCTAAATCTTACTGTGATGGTC
GACGTGGTTCACCTGATTGTGGAACCATGTTGTATTCGGCACCAGAGCTCAGGAATGGGCTGTTGGTTACTGATAAGGTT
GATGTGTACAGTTTAGGAGTGATATATCTTGAGATCTTCATGCCTGCTGCTGTTAGTGTTAACAACAGAGTTGATGCATT
GATCGATTTGATGGAAAGACGATACAAACCAGAATGGACAGCTTGGTCCATCGATATGGAATTCTTGAAGGACCTAACTG
CTTTAAACCCATGTGACCGTCCATCTGTGGGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis