Browse Element(s) Details


OsAffx.10447.1.S1_at

Description gb:NM_184856.1
DB_XREF= gi:34896801
TID=OsAffx.10447.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015G17.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4029011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40260Os.52337.1.S1_at11/113+22328243..22334802regulator of chromosome condensation, putative, expressed
LOC_Os03g40260OsAffx.22679.1.S1_x_at11/113+22328243..22334802regulator of chromosome condensation, putative, expressed
LOC_Os03g40270Os.5039.1.S1_at11/113+22335957..22338542Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os03g40290OsAffx.10447.1.S1_at11/113+22354481..22355203hypothetical protein
LOC_Os03g40300OsAffx.13262.1.S1_at11/113+22357044..22357773hypothetical protein
LOC_Os03g40310Os.37314.1.S1_at4/113+22368427..22373259Peptidyl-prolyl cis-trans isomerase E, putative, expressed
LOC_Os03g40320NANA3+22377728..22378347hypothetical protein
LOC_Os03g40330OsAffx.25450.1.S1_at11/113+22378634..22379450Glycosyl hydrolases family 17 protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10447.1.S1_at--229--6412Chr12:8833666..8833689 (23 bp)
GATCTGGCCGGAGCAAGCTACTCCT
NONE
OsAffx.10447.1.S1_at--857--2691Chr03:22355023..22355047 (25 bp)
AAGCTACTCCTGTGCGGCGTCAATG
LOC_Os03g40290
OsAffx.10447.1.S1_at--1013--8291Chr03:22354783..22354807 (25 bp)
GGCTTTGGCCTCGACGGCTTGTGCA
LOC_Os03g40290
OsAffx.10447.1.S1_at--606--10731Chr03:22354765..22354789 (25 bp)
TTGTGCACCGTAGCTGGTTCCGGCT
LOC_Os03g40290
OsAffx.10447.1.S1_at--1130--8411Chr03:22354684..22354708 (25 bp)
GGCCTCAACGGCTGTGGTCTACGAT
LOC_Os03g40290
OsAffx.10447.1.S1_at--495--4731Chr03:22354674..22354698 (25 bp)
GCTGTGGTCTACGATGCTCTATAAA
LOC_Os03g40290
OsAffx.10447.1.S1_at--1064--10151Chr03:22354655..22354679 (25 bp)
TATAAATGTGACCTTGCCCAGCAAC
LOC_Os03g40290
OsAffx.10447.1.S1_at--966--6211Chr03:22354600..22354624 (25 bp)
GAGGCGCTCTATAACTGTGATGTCT
LOC_Os03g40290
OsAffx.10447.1.S1_at--1108--8671Chr03:22354585..22354609 (25 bp)
TGTGATGTCTCTTTAGCCACCGAAC
LOC_Os03g40290
OsAffx.10447.1.S1_at--326--8931Chr03:22354542..22354566 (25 bp)
TGACCAGCTTGGCTCTCATCCATCA
LOC_Os03g40290
OsAffx.10447.1.S1_at--880--572Chr07:24829008..24829032 (25 bp)
ATCCATCATCTAGGTGTTGCTCGTG
NONE
Target Sequence 
GATCTGGCCGGAGCAAGCTACTCCTGTGCGGCGTCAATGGGAGGCGGAGGTGGCAGCGTCTGGCGACTCGGCGGCTGGCG
GCAGCCGGCACAGGAGGTCGGCGCGCGCGGAAGACGCAGTGGCGACCGGCGGCGGAGGTAGCAGTGGCGAAGGCTGACAG
CGGAGGCCGCGGGGGCGGAGGTTGCGATGGCCGGGGCTGTGGCGCCCGGCAGCGGGCCTCGTCTCCCCCCCCACCCCCTG
CGGCTGGCGGTGGAGGCTTTGGCCTCGACGGCTTGTGCACCGTAGCTGGTTCCGGCTGGCGGTGCGCCGACCCGCGGCTC
GTGGTCGGCTCTGTGGCGCCGGCGGCGGGCTGTGGCCTCAACGGCTGTGGTCTACGATGCTCTATAAATGTGACCTTGCC
CAGCAACATCTTCCCTCCCCTGTCCTCCCTCCTCTTTGAGGCGCTCTATAACTGTGATGTCTCTTTAGCCACCGAACCTG
TGCTACTCCTTGCCCTGACCAGCTTGGCTCTCATCCATCATCTAGGTGTTGCTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10447.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis