Browse Element(s) Details


Os.37314.1.S1_at

Description gb:AK059328.1
DB_XREF= gi:32969346
TID=Os.37314.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peptidyl-prolyl cis-trans isomerase (OSJNBa0015G17.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-A04, full insert sequence.
FL= gb:AK059328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g403104/11Peptidyl-prolyl cis-trans isomerase E, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40290OsAffx.10447.1.S1_at11/113+22354481..22355203hypothetical protein
LOC_Os03g40300OsAffx.13262.1.S1_at11/113+22357044..22357773hypothetical protein
LOC_Os03g40310Os.37314.1.S1_at4/113+22368427..22373259Peptidyl-prolyl cis-trans isomerase E, putative, expressed
LOC_Os03g40320NANA3+22377728..22378347hypothetical protein
LOC_Os03g40330OsAffx.25450.1.S1_at11/113+22378634..22379450Glycosyl hydrolases family 17 protein
LOC_Os03g40360OsAffx.31892.5.S1_x_at11/113+22384847..22386490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40360OsAffx.31892.5.S1_at10/113+22384847..22386490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40360OsAffx.31892.1.S1_x_at2/113+22384847..22386490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40360OsAffx.31892.3.S1_at1/113+22384847..22386490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40370Os.12987.1.S1_at2/113+22389484..22392294F-box domain containing protein
LOC_Os03g40380OsAffx.3598.1.S1_x_at2/113+22395769..22396161expressed protein
LOC_Os03g40390Os.54052.1.S1_at11/113+22397941..22399643expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37314.1.S1_at--571--7571Chr03:22368614..22368638 (25 bp)
GGGCTGATGCAGATACTTGGTTCGA
LOC_Os03g40310
Os.37314.1.S1_at--160--10531Chr03:22368557..22368581 (25 bp)
TTCAGGCAGAGCAGCGTGCAGCGAT
LOC_Os03g40310
Os.37314.1.S1_at--390--5731Chr03:22368466..22368490 (25 bp)
GACTGATACCAATGCAGACCCCATG
LOC_Os03g40310
Os.37314.1.S1_at--347--5051Chr03:22368438..22368462 (25 bp)
GCAGCAGAAGCTCAGGCCTTGAAAC
LOC_Os03g40310
Os.37314.1.S1_at--283--3431Chr03:22368414..22368438 (25 bp)
CAGAGCTCTTAAATCCTTGTGTATT
NONE
Os.37314.1.S1_at--258--7011Chr03:22368373..22368397 (25 bp)
GTACTGCAGGCATGTCCATTTGTCA
NONE
Os.37314.1.S1_at--701--631Chr03:22368347..22368371 (25 bp)
ATGCATGCTATTCTAAATCCGTCGG
NONE
Os.37314.1.S1_at--193--9791Chr03:22368334..22368358 (25 bp)
TAAATCCGTCGGTGCAACTAACATG
NONE
Os.37314.1.S1_at--947--2531Chr03:22368319..22368343 (25 bp)
AACTAACATGCTATTCTCTGCGGAC
NONE
Os.37314.1.S1_at--178--9511Chr03:22368305..22368329 (25 bp)
TCTCTGCGGACTTGCTAAGCTAGTT
NONE
Os.37314.1.S1_at--472--8791Chr03:22368263..22368287 (25 bp)
TGTTCATACTGCCTGTGTACCACTA
NONE
Target Sequence 
GGGCTGATGCAGATACTTGGTTCGAGAGGCAGCAGCAGGAAGAAGAAATGCAACGCCTTCAGGCAGAGCAGCGTGCAGCG
ATGCAGGCAGCAGAGAAGCTGCACAGGGAGAAATTGGCTGCAGAAAAAGAAGGGGAGAAAGAAGAGGAGACTGATACCAA
TGCAGACCCCATGGCTGCAGCAGAAGCTCAGGCCTTGAAACAGAGCTCTTAAATCCTTGTGTATTAATGTTAGAACAGGT
AGTACTGCAGGCATGTCCATTTGTCAAATGCATGCTATTCTAAATCCGTCGGTGCAACTAACATGCTATTCTCTGCGGAC
TTGCTAAGCTAGTTGTTAAGTTGGAGCTTTCTGTTCATACTGCCTGTGTACCACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis