Browse Element(s) Details


Os.5039.1.S1_at

Description gb:AF294725.1
DB_XREF= gi:10442697
TID=Os.5039.1
CNT=205
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.5039 (NCBI UniGene Cluster)
DEF=Oryza sativa reversibly glycosylated polypeptide mRNA, complete cds.
PROD=reversibly glycosylated polypeptide
FL= gb:AF294725.1 gb:AK061813.1 gb:AK098933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4027011/11Alpha-1,4-glucan-protein synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40220OsAffx.10237.1.S1_at1/113+22312331..22314326transposon protein, putative, unclassified
LOC_Os03g40220OsAffx.16318.1.S1_x_at1/113+22312331..22314326transposon protein, putative, unclassified
LOC_Os03g40230OsAffx.25448.1.S1_at11/113+22315656..22316323hypothetical protein
LOC_Os03g40240NANA3+22320341..22321433hypothetical protein
LOC_Os03g40250Os.29772.3.S1_x_at11/113+22323928..22325844Leucine Rich Repeat family protein, expressed
LOC_Os03g40250Os.29772.1.S1_at10/113+22323928..22325844Leucine Rich Repeat family protein, expressed
LOC_Os03g40260Os.52337.1.S1_at11/113+22328243..22334802regulator of chromosome condensation, putative, expressed
LOC_Os03g40260OsAffx.22679.1.S1_x_at11/113+22328243..22334802regulator of chromosome condensation, putative, expressed
LOC_Os03g40270Os.5039.1.S1_at11/113+22335957..22338542Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os03g40290OsAffx.10447.1.S1_at11/113+22354481..22355203hypothetical protein
LOC_Os03g40300OsAffx.13262.1.S1_at11/113+22357044..22357773hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0000138cellular_componentGolgi trans cisterna
GO:0005795cellular_componentGolgi stack
GO:0016020cellular_componentmembrane
GO:0016760molecular_functioncellulose synthase (UDP-forming) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5039.1.S1_at--633--5311Chr03:22336604..22336626 (23 bp)
GAAGGTCATCTGTGACCACCTGAGC
LOC_Os03g40270
Os.5039.1.S1_at--853--7371Chr03:22336593..22336617 (25 bp)
GTGACCACCTGAGCCTGGGAGTGAA
LOC_Os03g40270
Os.5039.1.S1_at--263--8991Chr03:22336572..22336596 (25 bp)
TGAAGACTGGACTGCCGTACATCTG
LOC_Os03g40270
Os.5039.1.S1_at--140--491Chr03:22336552..22336576 (25 bp)
ATCTGGCACAGCAAGGCTAGCAACC
LOC_Os03g40270
Os.5039.1.S1_at--864--10011Chr03:22336535..22336559 (25 bp)
TAGCAACCCCTTCGTGAACTTGAAG
LOC_Os03g40270
Os.5039.1.S1_at--247--10611Chr03:22336492..22336516 (25 bp)
TTCTGGCAGGAGGACATCATCCCCT
LOC_Os03g40270
Os.5039.1.S1_at--582--5631Chr03:22336435..22336459 (25 bp)
GACACCGTCCAGAAGTGCTACCTCT
LOC_Os03g40270
Os.5039.1.S1_at--1002--6351Chr03:22336348..22336372 (25 bp)
GATGCCATGGTCACCTGGATCGAGG
LOC_Os03g40270
Os.5039.1.S1_at--484--9671Chr03:22336338..22336362 (25 bp)
TCACCTGGATCGAGGCCTGGGATGA
LOC_Os03g40270
Os.5039.1.S1_at--913--8631Chr03:22336321..22336345 (25 bp)
TGGGATGAGCTGAACCCCTCGACTG
LOC_Os03g40270
Os.5039.1.S1_at--902--111Chr03:22336139..22336163 (25 bp)
ATTCTTTGTTGTTATGCTGGTTCTT
LOC_Os03g40270
Target Sequence 
GAAGGTCATCTGTGACCACCTGAGCCTGGGAGTGAAGACTGGACTGCCGTACATCTGGCACAGCAAGGCTAGCAACCCCT
TCGTGAACTTGAAGAAGGAATACAAGGGCATCTTCTGGCAGGAGGACATCATCCCCTTCTTCCAGAACGCCACCATCCCC
AAGGAGTGCGACACCGTCCAGAAGTGCTACCTCTCCCTCGCCGAGCAGGTCAGGGAGAAGCTCGGCAAGATCGACCCCTA
CTTCGTCAAGCTTGCCGATGCCATGGTCACCTGGATCGAGGCCTGGGATGAGCTGAACCCCTCGACTGCTGCTGTCGAGA
ACGGCAAGGCCAAGTAGATTGATCCNTGGGGAGCTTGTGTGTCGCAGGATGGAAAGTACCCTTTAAGTGAAAGTGTTGCT
GTGGCCTAGGCCCCCTAGATATAGCTCTTTTTGAGANGAAGGGAGAGATTACTTAAGCAACTTTATAATTCTTTGTTGTT
ATGCTGGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis