Browse Element(s) Details


OsAffx.10237.1.S1_at

Description gb:NM_186488.1
DB_XREF= gi:34900061
GEN=OJ1664_D08.12
TID=OsAffx.10237.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1664_D08.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g111708/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g218201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g402201/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11110Os.8521.2.S1_x_at11/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.8521.1.S1_at11/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.8521.1.S1_a_at10/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.51424.1.S1_at1/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11120Os.9994.1.S1_at11/117+6135357..6139332hydrolase, NUDIX family protein, expressed
LOC_Os07g11130OsAffx.1477.1.S1_at11/117+6144464..6144910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11150Os.44418.2.S1_at11/117+6145270..6150849expressed protein
LOC_Os07g11150Os.44418.1.S1_at11/117+6145270..6150849expressed protein
LOC_Os07g11160OsAffx.20490.1.S1_at6/117+6153663..6157210transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11170OsAffx.10237.1.S1_at8/117+6157915..6158907retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11180NANA7+6160014..6162998retrotransposon protein, putative, unclassified
LOC_Os07g11190OsAffx.8166.1.S1_at1/117+6164271..6166541transposon protein, putative, unclassified
LOC_Os07g11200NANA7+6166805..6169329retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11210OsAffx.22465.1.S1_at4/117+6170380..6171401retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11220NANA7+6174985..6178617retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11230NANA7+6178933..6181866retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10237.1.S1_at--6--10114Chr10:9870021..9870045 (25 bp)
TATGTTCCAAATATCCGTTCGGATG
NONE
OsAffx.10237.1.S1_at--274--2451NONE
AAAATCTGCAGTGACTGTCTCCACG
NONE
OsAffx.10237.1.S1_at--1144--5011NONE
GCAGTGACTGTCTCCACGGAAGAAC
NONE
OsAffx.10237.1.S1_at--226--4351Chr07:6158588..6158612 (25 bp)
CCACGGAAGAACTAGATGGCTACCT
LOC_Os07g11170
OsAffx.10237.1.S1_at--756--2513Chr07:6158677..6158701 (25 bp)
AACTATGACTTCAACAACTTCGACG
LOC_Os07g11170
OsAffx.10237.1.S1_at--602--1992Chr07:6158731..6158755 (25 bp)
ACTCCTCTCTTTTTGGCGTCTTTAT
LOC_Os07g11170
OsAffx.10237.1.S1_at--204--2751Chr07:6158773..6158797 (25 bp)
AAGAACAACGTCTGGCACGCGAGGC
LOC_Os07g11170
OsAffx.10237.1.S1_at--352--891Chr07:6158794..6158818 (25 bp)
AGGCCGATGAGCTGTGCACATGATA
LOC_Os07g11170
OsAffx.10237.1.S1_at--311--5891Chr07:6158802..6158826 (25 bp)
GAGCTGTGCACATGATAGGAAGCCA
LOC_Os07g11170
OsAffx.10237.1.S1_at--439--2671Chr07:6158826..6158850 (25 bp)
AAGCGCCGCCGGTTGGAACAAGAGC
LOC_Os07g11170
OsAffx.10237.1.S1_at--750--2771Chr07:6158845..6158869 (25 bp)
AAGAGCGGCAAACCCAAGAGCAAGC
LOC_Os07g11170
Target Sequence 
TATGTTCCAAATATCCGTTCGGATGAACAAGAAAAATCTGCAGTGACTGTCTCCACGGAAGAACTAGATGGCTACCTCAG
CTCTCCCGGCGTCGACTCCCGTCAACCAACCGAGATTCTCGACTATGACGACTTCGGCTACAACTATGACTTCAACAACT
TCGACGACCTTGATGAAGACTACGAAGACAACTACACTCCTCTCTTTTTGGCGTCTTTATGGCCGACAACGAGACAGAAG
AACAACGTCTGGCACGCGAGGCCGATGAGCTGTGCACATGATAGGAAGCCAAGCGCCGCCGGTTGGAACAAGAGCGGCAA
ACCCAAGAGCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10237.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis