Browse Element(s) Details


Os.8521.2.S1_x_at

Description gb:NM_186483.1
DB_XREF= gi:34900051
GEN=OJ1664_D08.6
TID=Os.8521.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8521 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative mRNA binding protein precursor (OJ1664_D08.6), mRNA.
PROD=putative mRNA binding protein precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1111011/11mRNA-binding protein precursor, putative, expressed
LOC_Os02g211905/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11060Os.35753.1.S1_a_at11/117+6106359..6113781expressed protein
LOC_Os07g11070Os.44419.1.S1_at11/117+6116162..6119949bZIP protein, putative, expressed
LOC_Os07g11080OsAffx.8864.1.S1_at8/117+6123094..6126197retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g11090Os.46273.1.S1_at3/117+6126567..6127886retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g11100OsAffx.16208.1.S1_at11/117+6131217..6131664hypothetical protein
LOC_Os07g11100OsAffx.20978.1.S1_at5/117+6131217..6131664hypothetical protein
LOC_Os07g11110Os.8521.2.S1_x_at11/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.8521.1.S1_at11/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.8521.1.S1_a_at10/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.51424.1.S1_at1/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11120Os.9994.1.S1_at11/117+6135357..6139332hydrolase, NUDIX family protein, expressed
LOC_Os07g11130OsAffx.1477.1.S1_at11/117+6144464..6144910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11150Os.44418.2.S1_at11/117+6145270..6150849expressed protein
LOC_Os07g11150Os.44418.1.S1_at11/117+6145270..6150849expressed protein
LOC_Os07g11160OsAffx.20490.1.S1_at6/117+6153663..6157210transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11170OsAffx.10237.1.S1_at8/117+6157915..6158907retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11180NANA7+6160014..6162998retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003729molecular_functionmRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8521.2.S1_x_at--61--2852Chr07:6133276..6133300 (25 bp)
AAGTACATCGCGGAGCAGTTCGGCA
LOC_Os07g11110
Os.8521.2.S1_x_at--1061--3432Chr07:6133291..6133315 (25 bp)
CAGTTCGGCAGCTGGGCGTCGTTCC
LOC_Os07g11110
Os.8521.2.S1_x_at--897--9392Chr07:6133309..6133333 (25 bp)
TCGTTCCGGCCGCAGTACATGATCG
LOC_Os07g11110
Os.8521.2.S1_x_at--542--7012Chr07:6133323..6133347 (25 bp)
GTACATGATCGGCTCCGGCAACAAC
LOC_Os07g11110
Os.8521.2.S1_x_at--411--3212Chr07:6133347..6133371 (25 bp)
CAAGGACTGCGAGGAGTGGTTCTTC
LOC_Os07g11110
Os.8521.2.S1_x_at--258--6131Chr07:6133360..6133797 (25 bp)
GAGTGGTTCTTCGACAGGATTGTGA
LOC_Os07g11110
Os.8521.2.S1_x_at--813--7371Chr07:6133836..6133860 (25 bp)
GTGACGAACATATCGCACGTGCGCG
LOC_Os07g11110
Os.8521.2.S1_x_at--976--8011Chr07:6133912..6133936 (25 bp)
GGAGGATCTTCAACTGCGTCTCCGA
LOC_Os07g11110
Os.8521.2.S1_x_at--726--10511Chr07:6133950..6133974 (25 bp)
TTCAACGGCCTCGTCAAGATGTGCG
LOC_Os07g11110
Os.8521.2.S1_x_at--657--2491Chr07:6134595..6134614 (20 bp)
AACATGCACTTCTACGCGGAGCCGA
LOC_Os07g11110
Os.8521.2.S1_x_at--475--1851Chr07:6134650..6134674 (25 bp)
ACGAACCTGCCGGAGGACCTCAAGG
LOC_Os07g11110
Target Sequence 
AAGTACATCGCGGAGCAGTTCGGCAGCTGGGCGTCGTTCCGGCCGCAGTACATGATCGGCTCCGGCAACAACAAGGACTG
CGAGGAGTGGTTCTTCGACAGGATTGTGAGGGGGAGGCCGGTGCCGATCCCGGGGTCGGGGATGCAGGTGACGAACATAT
CGCACGTGCGCGACCTGGCGAGCATGGTGGCGCTCGCCGTGGAGAGCCCCGGCGCGGCGGCGGGGAGGATCTTCAACTGC
GTCTCCGACCGCGCCGTCACCTTCAACGGCCTCGTCAAGATGTGCGCCGCCGCCGCCGGCGCCCAGCCGGAGATCCTCCA
CTACGACCCCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATGCACTTCTACGCGGAGCCGAGGG
CGGCGAAGGAGGTGCTTGGATGGAGGAGCTCGACGAACCTGCCGGAGGACCTCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8521.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis