Browse Element(s) Details


Os.35753.1.S1_a_at

Description gb:AK065682.1
DB_XREF= gi:32975700
TID=Os.35753.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35753 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST C72879(E2411)~similar to Arabidopsis thaliana chromosome 5, At5g19050~unknown protein (OJ1664_D08.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013035L06, full insert sequence.
FL= gb:AK065682.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1106011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11050OsAffx.16207.1.S1_at11/117+6088292..6089335adenylate isopentenyltransferase 5, putative
LOC_Os07g11060Os.35753.1.S1_a_at11/117+6106359..6113781expressed protein
LOC_Os07g11070Os.44419.1.S1_at11/117+6116162..6119949bZIP protein, putative, expressed
LOC_Os07g11080OsAffx.8864.1.S1_at8/117+6123094..6126197retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g11090Os.46273.1.S1_at3/117+6126567..6127886retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g11100OsAffx.16208.1.S1_at11/117+6131217..6131664hypothetical protein
LOC_Os07g11100OsAffx.20978.1.S1_at5/117+6131217..6131664hypothetical protein
LOC_Os07g11110Os.8521.2.S1_x_at11/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.8521.1.S1_at11/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.8521.1.S1_a_at10/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.51424.1.S1_at1/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11120Os.9994.1.S1_at11/117+6135357..6139332hydrolase, NUDIX family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35753.1.S1_a_at--249--2971Chr07:6108807..6108831 (25 bp)
AATGGATTTGATGCCCAGGGAAGCA
LOC_Os07g11060
Os.35753.1.S1_a_at--127--5991Chr07:6107848..6107872 (25 bp)
GAGACTTGGTCATATGTCAACAACA
LOC_Os07g11060
Os.35753.1.S1_a_at--652--2191Chr07:6107580..6107853 (25 bp)
ACAACACAGTGCCAGGTTATTTTCT
LOC_Os07g11060
Os.35753.1.S1_a_at--11--271Chr07:6106909..6106933 (25 bp)
ATATGTCCCGGAATACGTTGATAAG
LOC_Os07g11060
Os.35753.1.S1_a_at--577--6551Chr07:6106784..6106808 (25 bp)
GATTATGTCGCGCATTGGGCAACGC
LOC_Os07g11060
Os.35753.1.S1_a_at--245--2371Chr07:6106735..6106759 (25 bp)
AAACCATGCTCTCTCCAATAGGGTG
LOC_Os07g11060
Os.35753.1.S1_a_at--203--5171Chr07:6106711..6106735 (25 bp)
GCAAGAAGCAGTTCGGGCCATTGTA
LOC_Os07g11060
Os.35753.1.S1_a_at--475--2871Chr07:6106661..6106685 (25 bp)
AAGGTTGGGACGATCCATGGAGCTA
LOC_Os07g11060
Os.35753.1.S1_a_at--492--7051Chr07:6106620..6106644 (25 bp)
GTAACATGTCTATCCCATTTTCCTC
LOC_Os07g11060
Os.35753.1.S1_a_at--633--9231Chr07:6106600..6106624 (25 bp)
TCCTCCCCTAGCAAAACGTCTTGTT
LOC_Os07g11060
Os.35753.1.S1_a_at--797--211Chr07:6106534..6106558 (25 bp)
ATTTGTTTTGCTTTGTTGCCTTAGT
LOC_Os07g11060
Target Sequence 
AATGGATTTGATGCCCAGGGAAGCAAATCCAGATGCTCCGATTACTGCCTACAGGTATCACTCCCTTTGTGCATATATGG
GTGATGATGACATGTTCAGCTCAGATCTTAGTGAAGATCAGTTGAGGCAGAGACTTGGTCATATGTCAACAACACAGTGC
CAGGTTATTTTCTCAATGGGGGATGAATATGTCCCGGAATACGTTGATAAGGAGGCACTTGTGGACAGATTATGTCGCGC
ATTGGGCAACGCGGAGAAAGTTGAAATAGAATGGGGAAACCATGCTCTCTCCAATAGGGTGCAAGAAGCAGTTCGGGCCA
TTGTAGATTTTGTTAAGAGAGAGGGGCCCAAAGGTTGGGACGATCCATGGAGCTAGATACNACAGCCATATGTAACATGT
CTATCCCATTTTCCTCCCCTAGCAAAACGTCTTGTTTTTACATGTTTCTTGATCATTTTTTTATAGTAATAATTCCTATT
TGTTTTGCTTTGTTGCCTTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35753.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis