Browse Element(s) Details


OsAffx.16207.1.S1_at

Description tigr:9635.m01077
TID=OsAffx.16207.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=tRNA isopentenyl transferase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1105011/11adenylate isopentenyltransferase 5, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11020OsAffx.16206.1.S1_at11/117+6061189..6067617Helix-loop-helix DNA-binding domain containing protein
LOC_Os07g11020Os.52782.1.S1_at1/117+6061189..6067617Helix-loop-helix DNA-binding domain containing protein
LOC_Os07g11030Os.47463.1.S1_x_at6/117+6070566..6075530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11030Os.14491.2.S1_x_at5/117+6070566..6075530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11040NANA7+6077124..6080429transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11050OsAffx.16207.1.S1_at11/117+6088292..6089335adenylate isopentenyltransferase 5, putative
LOC_Os07g11060Os.35753.1.S1_a_at11/117+6106359..6113781expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009691biological_processcytokinin biosynthesis
GO:0009824molecular_functionadenylate dimethylallyltransferase activity
GO:0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16207.1.S1_at--1059--7211Chr07:6088862..6088886 (25 bp)
GTCGACGACATGTGCGGCCGCGGGA
LOC_Os07g11050
OsAffx.16207.1.S1_at--661--8451Chr07:6089031..6089055 (25 bp)
TGGCCAATGCCATCGAGGACATCAA
LOC_Os07g11050
OsAffx.16207.1.S1_at--483--591Chr07:6089037..6089061 (25 bp)
ATGCCATCGAGGACATCAAGGCGAA
LOC_Os07g11050
OsAffx.16207.1.S1_at--377--371Chr07:6089051..6089075 (25 bp)
ATCAAGGCGAACACCCGCTGGCTGT
LOC_Os07g11050
OsAffx.16207.1.S1_at--726--5071Chr07:6089083..6089107 (25 bp)
GCAGCGCGCCAAGATCGTGAGGCTA
LOC_Os07g11050
OsAffx.16207.1.S1_at--1131--1271Chr07:6089094..6089118 (25 bp)
AGATCGTGAGGCTAGACCGCCTATG
LOC_Os07g11050
OsAffx.16207.1.S1_at--501--911Chr07:6089102..6089126 (25 bp)
AGGCTAGACCGCCTATGGCGAATCC
LOC_Os07g11050
OsAffx.16207.1.S1_at--535--4451Chr07:6089112..6089136 (25 bp)
GCCTATGGCGAATCCGCCGCGTGGA
LOC_Os07g11050
OsAffx.16207.1.S1_at--387--5231Chr07:6089121..6089145 (25 bp)
GAATCCGCCGCGTGGACGCCACGGA
LOC_Os07g11050
OsAffx.16207.1.S1_at--92--4071Chr07:6089205..6089229 (25 bp)
CGAGCATTGACACCGTGCGATCCTT
LOC_Os07g11050
OsAffx.16207.1.S1_at--178--9131Chr07:6089220..6089244 (25 bp)
TGCGATCCTTCCTCCACGGCGAATT
LOC_Os07g11050
Target Sequence 
GTCGACGACATGTGCGGCCGCGGGATGGTCGCCGAGATCGAGGCGGCGTTCGACCCGGACCGCACCGACTACTCCCGCGG
CGTCTGGCGCGCCATCGGCGTGCCGGAGCTCGACGCGTACCTCCGCTCGTGCGCCGCCGCCGGCGGCGAGGAGGAACGCG
CGCGGCTGCTGGCCAATGCCATCGAGGACATCAAGGCGAACACCCGCTGGCTGTCGTGCCGGCAGCGCGCCAAGATCGTG
AGGCTAGACCGCCTATGGCGAATCCGCCGCGTGGACGCCACGGAGGCGTTCCGGCGGCGCGGCGGCGCCGCCAACGAGGC
GTGGGAGCGGCACGTCGCCGCGCCGAGCATTGACACCGTGCGATCCTTCCTCCACGGCGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis