Browse Element(s) Details


Os.44419.1.S1_at

Description gb:NM_186481.1
DB_XREF= gi:34900047
GEN=OJ1664_D08.3
TID=Os.44419.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44419 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) bZIP protein-like (OJ1664_D08.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) bZIP protein-like (OJ1664_D08.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1107011/11bZIP protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11060Os.35753.1.S1_a_at11/117+6106359..6113781expressed protein
LOC_Os07g11070Os.44419.1.S1_at11/117+6116162..6119949bZIP protein, putative, expressed
LOC_Os07g11080OsAffx.8864.1.S1_at8/117+6123094..6126197retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g11090Os.46273.1.S1_at3/117+6126567..6127886retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g11100OsAffx.16208.1.S1_at11/117+6131217..6131664hypothetical protein
LOC_Os07g11100OsAffx.20978.1.S1_at5/117+6131217..6131664hypothetical protein
LOC_Os07g11110Os.8521.2.S1_x_at11/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.8521.1.S1_at11/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.8521.1.S1_a_at10/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.51424.1.S1_at1/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11120Os.9994.1.S1_at11/117+6135357..6139332hydrolase, NUDIX family protein, expressed
LOC_Os07g11130OsAffx.1477.1.S1_at11/117+6144464..6144910retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44419.1.S1_at--6--951Chr07:6116698..6116722 (25 bp)
AGGCAATTCGATGACTGGGCACAAA
LOC_Os07g11070
Os.44419.1.S1_at--708--2371Chr07:6116661..6116685 (25 bp)
AAACTGCGGGTATCCTTCCTGAGGA
LOC_Os07g11070
Os.44419.1.S1_at--447--1691Chr07:6116503..6116527 (25 bp)
AGCCTTCTCAGGACGAATTTGCCGG
LOC_Os07g11070
Os.44419.1.S1_at--526--5211Chr07:6116489..6116513 (25 bp)
GAATTTGCCGGAGCTGTTCAGAGTT
LOC_Os07g11070
Os.44419.1.S1_at--1004--4731Chr07:6116477..6116501 (25 bp)
GCTGTTCAGAGTTGTGTCGGATTTC
LOC_Os07g11070
Os.44419.1.S1_at--1037--8711Chr07:6116463..6116487 (25 bp)
TGTCGGATTTCTCACTTCAGTCAGC
LOC_Os07g11070
Os.44419.1.S1_at--393--9651Chr07:6116447..6116471 (25 bp)
TCAGTCAGCTGGGATGTTCAAGGGC
LOC_Os07g11070
Os.44419.1.S1_at--632--10491Chr07:6116431..6116455 (25 bp)
TTCAAGGGCGTGTGGTCGATTGCAC
LOC_Os07g11070
Os.44419.1.S1_at--888--6571Chr07:6116414..6116438 (25 bp)
GATTGCACACACCAATGACCAACTG
LOC_Os07g11070
Os.44419.1.S1_at--558--171Chr07:6116306..6116330 (25 bp)
ATTTTTGGCTTGTGGTGCCGAGATT
LOC_Os07g11070
Os.44419.1.S1_at--630--5271Chr07:6116271..6116295 (25 bp)
GAATGATCCTTTTTGAGCTACTGTT
LOC_Os07g11070
Target Sequence 
AGGCAATTCGATGACTGGGCACAAAAGTACATNCACCAAACTGCGGGTATCCTTCCTGAGGACAGGAACCCTGACGGTGC
ACGCCCCGATCCNATGGCGGAACGGAAGGCTGCCATGGAAAAGTTGGAGCTTTCTATGAAGGAGCTGGAGGAGATGTATG
TCAAGCAGTGCAGGGTGGTCAGGGAGAAGTCCCTCAGCCTTCTCAGGACGAATTTGCCGGAGCTGTTCAGAGTTGTGTCG
GATTTCTCACTTCAGTCAGCTGGGATGTTCAAGGGCGTGTGGTCGATTGCACACACCAATGACCAACTGGATGAATAATA
TAAGTTCTTTTGTTGTTGTAATCTTTCTTTCTTTTTGTTTATGTTGATAGGTTGATTAGTTGTTGTATATTGATTTTTGG
CTTGTGGTGCCGAGATTAAAAAAAAAAAGAATGATCCTTTTTGAGCTACTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis