Browse Element(s) Details


OsAffx.22465.1.S1_at

Description gb:NM_186489.1
DB_XREF= gi:34900063
GEN=OJ1664_D08.15
TID=OsAffx.22465.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) gypsy-type retrotransposon RIRE2-like protein (OJ1664_D08.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g112104/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g221101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g218101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11150Os.44418.2.S1_at11/117+6145270..6150849expressed protein
LOC_Os07g11150Os.44418.1.S1_at11/117+6145270..6150849expressed protein
LOC_Os07g11160OsAffx.20490.1.S1_at6/117+6153663..6157210transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11170OsAffx.10237.1.S1_at8/117+6157915..6158907retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11180NANA7+6160014..6162998retrotransposon protein, putative, unclassified
LOC_Os07g11190OsAffx.8166.1.S1_at1/117+6164271..6166541transposon protein, putative, unclassified
LOC_Os07g11200NANA7+6166805..6169329retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11210OsAffx.22465.1.S1_at4/117+6170380..6171401retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11220NANA7+6174985..6178617retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11230NANA7+6178933..6181866retrotransposon protein, putative, unclassified
LOC_Os07g11240OsAffx.5954.4.S1_x_at9/117+6185322..6192650retrotransposon protein, putative, unclassified
LOC_Os07g11240OsAffx.5954.5.S1_x_at7/117+6185322..6192650retrotransposon protein, putative, unclassified
LOC_Os07g11240OsAffx.5954.1.S1_x_at7/117+6185322..6192650retrotransposon protein, putative, unclassified
LOC_Os07g11240OsAffx.5954.3.S1_x_at3/117+6185322..6192650retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22465.1.S1_at--530--6291Chr07:6171234..6171258 (25 bp)
GATGATGCCATCATAGCCGCATTCA
LOC_Os07g11210
OsAffx.22465.1.S1_at--675--4512Chr07:6171249..6171273 (25 bp)
GCCGCATTCACAAAAGGAGTTCGTA
LOC_Os07g11210
OsAffx.22465.1.S1_at--599--6691Chr07:6171267..6171291 (25 bp)
GTTCGTAATGACCTTCTAGTCGGCA
LOC_Os07g11210
OsAffx.22465.1.S1_at--1060--6852Chr07:6171293..6171317 (25 bp)
GTTTGGATGCAAGCCTCCCAGGATA
LOC_Os07g11210
OsAffx.22465.1.S1_at--472--7091Chr07:6171511..6171535 (25 bp)
GTCAACAATCGCGAGTCAACACCTT
NONE
OsAffx.22465.1.S1_at--505--5271Chr07:6171548..6171572 (25 bp)
GAATGCTCAATGTTCGCATCACCCA
NONE
OsAffx.22465.1.S1_at--404--6831Chr07:6171598..6171622 (25 bp)
GTTTCATCTATAATCAGTTTGCCGA
NONE
OsAffx.22465.1.S1_at--29--6231Chr07:6171696..6171720 (25 bp)
GATGGCCCACCTGGTTTTCAAGATT
NONE
OsAffx.22465.1.S1_at--474--3191Chr07:6171734..6171758 (25 bp)
CAATCACATCTTGGTTGGGCCGCAA
NONE
OsAffx.22465.1.S1_at--1001--7551Chr07:6171750..6171774 (25 bp)
GGGCCGCAAGCCTATGAGTCCAAAC
NONE
OsAffx.22465.1.S1_at--440--6451Chr07:6171800..6171824 (25 bp)
GATCAATACCGTTCAGTCGGACACA
NONE
Target Sequence 
GATGATGCCATCATAGCCGCATTCACAAAAGGAGTTCGTAATGACCTTCTAGTCGGCAAGTTTGGATGCAAGCCTCCCAG
GATAGTCAAGCAAATGTTTGAGAAGGCCAATGAGTATGCAAAGGCTGACGAAGCCAAATCCAAGAAAGATGGACCAACCG
TAGGGGCGAGTGGAAGCGGCACTCATAACAAAGATCACAAGCGGAAGCCCGAGGATCTGGTGGCGACTACAACACATTCT
TCCCGTCAACAATCGCGAGTCAACACCTTCGACAAAATTATGAATGCTCAATGTTCGCATCACCCAAATTCCAACCATGC
TGCCAAAGATTGTTTCATCTATAATCAGTTTGCCGAACAATATGCCAAACAAGCGAAGAAGCTGACTGATGGAGAGCAAA
GCACCTCGAAGAAAAAGGACGACGATGACGATGGCCCACCTGGTTTTCAAGATTCTCGTAAGGAGCTCAATCACATCTTG
GTTGGGCCGCAAGCCTATGAGTCCAAACGGAAGCAGAAGCTAACTGATAAGGAGATCAATACCGTTCAGTCGGACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis